Os01g0865100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Uricase (Fragment).
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Os01g0865100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Uricase (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 204.97 | 0.673 | 7.3 | 0.862 | 2.66 | 2.05 | 1.13 | -2.64 | 0.511 | 21.5 | 26.1 | 691 | 10.2 | -- |
| 214.61 | 0.682 | 7.39 | 0.426 | 3.71 | 2.69 | 0.446 | -- | 0.33 | 20.8 | 26.2 | 623 | 6.92 | -- |
| 205.41 | 0.668 | 7.31 | 0.8 | 3.11 | 2.35 | -- | -2.35 | 0.529 | 21.1 | 26.07 | 691 | 8.76 | -- |
| 214.23 | 0.682 | 7.38 | 0.41 | 3.63 | 2.66 | -- | -- | 0.364 | 20.8 | 26.1 | 615 | 6.99 | -- |
| 289.34 | 0.792 | 7.35 | 0.0877 | -- | 2.87 | -- | -0.485 | 0.0221 | -- | 34.21 | 173 | 8.65 | -- |
| 293.08 | 0.803 | 7.43 | 0.0477 | 2.87 | -- | -0.448 | -- | 0.00611 | 22.9 | -- | -- | -- | -- |
| 293.92 | 0.803 | 7.43 | 0.0664 | 2.87 | -- | -- | -- | 0.00794 | 22.9 | -- | -- | -- | -- |
| 273.87 | 0.771 | 7.4 | 0.224 | -- | 3.24 | -- | -- | -0.248 | -- | 34.8 | 1490 | 7.12 | -- |
| 217.77 | 0.687 | 7.4 | -- | 3.55 | 2.46 | -- | -- | 0.274 | 21 | 26.1 | 633 | 7.1 | -- |
| 804.49 | 1.33 | 7.35 | 0.128 | -- | -- | -- | -- | 0.0273 | -- | -- | -- | -- | -- |
| 294.03 | 0.802 | 7.43 | -- | 2.87 | -- | -- | -- | 0.000543 | 22.9 | -- | -- | -- | -- |
| 261.95 | 0.754 | 7.39 | -- | -- | 3.75 | -- | -- | -0.13 | -- | 34.8 | 1487 | 7.47 | -- |
| 804.92 | 1.32 | 7.36 | -- | -- | -- | -- | -- | 0.0132 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 208.34 | temperature | 25 | 720 | > th | dose dependent | rect. | 22 | 1 |
| 2 | 212.46 | temperature | 25 | 720 | < th | dose independent | rect. | 15 | 9 |
| 3 | 212.93 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 3 |
| 12 | 215.75 | temperature | 25 | 720 | > th | dose independent | rect. | 13 | 11 |
| 13 | 215.96 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 9 |
| 17 | 216.21 | temperature | 25 | 720 | < th | dose independent | rect. | 11 | 13 |
| 21 | 216.73 | temperature | 25 | 720 | < th | dose independent | sin | 17 | NA |
| 31 | 218.11 | temperature | 25 | 720 | > th | dose independent | rect. | 11 | 13 |
| 47 | 219.70 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 17 |
| 49 | 219.88 | temperature | 25 | 270 | < th | dose independent | rect. | 11 | 21 |
| 50 | 219.94 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 16 |
| 60 | 220.63 | temperature | 25 | 720 | > th | dose independent | sin | 17 | NA |
| 69 | 221.09 | temperature | 25 | 720 | > th | dose dependent | sin | 13 | NA |
| 110 | 223.07 | temperature | 25 | 720 | > th | dose dependent | rect. | 18 | 14 |
| 111 | 223.07 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 20 |
| 138 | 224.05 | temperature | 30 | 10 | < th | dose dependent | rect. | 16 | 17 |
| 210 | 226.30 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 5 |
| 286 | 228.09 | radiation | 1 | 720 | < th | dose independent | rect. | 7 | 19 |
| 295 | 228.49 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 2 |
| 296 | 228.49 | radiation | 1 | 720 | < th | dose dependent | rect. | 7 | 19 |
| 317 | 229.14 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 8 |
| 391 | 230.47 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 21 |
| 394 | 230.50 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 21 |
| 405 | 230.63 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 10 |
| 444 | 231.07 | radiation | 1 | 720 | < th | dose independent | sin | 20 | NA |
| 514 | 232.02 | radiation | 1 | 720 | < th | dose dependent | sin | 19 | NA |
| 575 | 232.89 | radiation | 1 | 720 | < th | dose dependent | rect. | 13 | 13 |
| 579 | 232.92 | temperature | 15 | 30 | > th | dose dependent | rect. | 20 | 23 |
| 608 | 233.38 | radiation | 1 | 720 | > th | dose independent | sin | 21 | NA |
| 609 | 233.40 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 22 |
| 637 | 233.87 | radiation | 1 | 720 | < th | dose dependent | rect. | 15 | 11 |
| 646 | 234.05 | temperature | 30 | 720 | < th | dose dependent | sin | 17 | NA |
| 708 | 234.48 | temperature | 20 | 720 | > th | dose dependent | rect. | 11 | 14 |
| 819 | 235.82 | radiation | 1 | 720 | < th | dose independent | rect. | 3 | 23 |
| 825 | 235.92 | radiation | 1 | 720 | < th | dose independent | rect. | 7 | 23 |
| 879 | 236.34 | radiation | 1 | 720 | > th | dose independent | rect. | 15 | 23 |
| 890 | 236.46 | radiation | 20 | 14400 | < th | dose independent | rect. | 21 | 9 |
| 904 | 236.60 | radiation | 1 | 1440 | > th | dose independent | sin | 16 | NA |
| 918 | 236.70 | temperature | 30 | 270 | < th | dose dependent | sin | 11 | NA |
| 925 | 236.76 | radiation | 1 | 270 | < th | dose dependent | rect. | 5 | 13 |
| 959 | 237.04 | radiation | 1 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 977 | 237.12 | radiation | 1 | 1440 | < th | dose independent | rect. | 15 | 8 |
| 979 | 237.14 | radiation | 1 | 1440 | < th | dose independent | rect. | 15 | 6 |
| 998 | 237.27 | radiation | 1 | 270 | < th | dose independent | rect. | 5 | 13 |