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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0864100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.3 (0.0206) R2 : 0.000724
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0249 (0.0434) R2dN8 : 0.000934 R2N8 : 0.000724
σ : 0.388
deviance : 69.22
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
61.82 0.369 3.31 0.173 0.295 0.281 -0.358 1.16 -0.0631 6.68 91 4833 -- --
63.54 0.371 3.31 0.104 0.295 0.373 -0.508 -- -0.0993 6.35 91.97 4619 -- --
62.11 0.367 3.31 0.174 0.294 0.272 -- 1.27 -0.0568 6.9 91.01 4907 -- --
64.1 0.373 3.31 0.0871 0.264 0.329 -- -- -0.0873 6.85 97.19 4271 -- --
65.67 0.377 3.32 0.185 -- 0.265 -- 1.28 -0.0512 -- 91 5835 -- --
64.9 0.378 3.29 0.0781 0.262 -- -0.497 -- -0.0232 6.6 -- -- -- --
65.5 0.379 3.29 0.0712 0.261 -- -- -- -0.0214 6.86 -- -- -- --
67.66 0.383 3.31 0.0933 -- 0.334 -- -- -0.0845 -- 97 4263 -- --
64.3 0.373 3.31 -- 0.263 0.329 -- -- -0.0998 6.82 102.7 4302 -- --
69.06 0.388 3.3 0.0769 -- -- -- -- -0.0164 -- -- -- -- --
65.64 0.379 3.29 -- 0.261 -- -- -- -0.0293 6.84 -- -- -- --
67.88 0.384 3.31 -- -- 0.327 -- -- -0.0941 -- 101.7 4261 -- --
69.22 0.388 3.3 -- -- -- -- -- -0.0249 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 55.32 radiation 10.0 30 > th dose independent rect. 6 2
15 57.25 humidity 80.0 10 < th dose independent rect. 6 2
33 57.70 humidity 80.0 10 < th dose independent rect. 23 9
47 58.82 temperature 25.0 10 > th dose independent rect. 7 1
48 58.83 humidity 90.0 90 < th dose independent rect. 1 7
54 59.01 temperature 25.0 90 < th dose independent rect. 6 1
60 60.05 radiation 10.0 30 > th dose independent sin 11 NA
65 60.39 atmosphere 1005.0 30 > th dose dependent rect. 2 6
66 60.41 humidity 80.0 14400 < th dose dependent rect. 4 5
70 60.47 wind 3.0 10 < th dose dependent rect. 6 2
73 60.51 humidity 90.0 10 < th dose dependent rect. 2 6
106 60.60 radiation 10.0 10 > th dose dependent rect. 6 1
108 60.60 humidity 90.0 10 < th dose dependent rect. 6 2
133 60.61 atmosphere 1000.0 30 > th dose independent rect. 8 22
135 60.63 temperature 20.0 30 > th dose dependent rect. 2 6
145 60.79 temperature 25.0 10 > th dose independent rect. 5 3
155 60.85 humidity 70.0 14400 > th dose independent rect. 8 1
159 60.89 atmosphere 1005.0 10 > th dose independent rect. 7 1
164 60.92 radiation 10.0 30 > th dose independent rect. 13 19
178 61.02 humidity 70.0 14400 > th dose independent rect. 4 5
179 61.02 humidity 70.0 14400 > th dose independent rect. 24 9
192 61.05 atmosphere 1000.0 30 > th dose independent rect. 3 23
198 61.10 humidity 70.0 14400 < th dose independent rect. 8 1
215 61.18 atmosphere 995.0 720 > th dose independent rect. 7 8
217 61.19 humidity 70.0 14400 < th dose independent rect. 7 3
251 61.27 wind 9.0 4320 < th dose independent rect. 7 2
257 61.28 atmosphere 1000.0 30 > th dose independent rect. 8 18
263 61.30 atmosphere 1005.0 30 > th dose independent rect. 2 6
265 61.31 temperature 20.0 10 > th dose dependent rect. 7 1
266 61.31 atmosphere 1005.0 10 > th dose dependent rect. 2 2
298 61.36 atmosphere 1005.0 90 > th dose dependent rect. 2 1
303 61.37 humidity 50.0 4320 > th dose dependent rect. 11 2
309 61.39 wind 3.0 30 < th dose independent rect. 6 2
312 61.40 atmosphere 1000.0 90 > th dose independent rect. 8 11
325 61.41 humidity 70.0 4320 > th dose independent rect. 10 2
332 61.44 humidity 90.0 4320 < th dose dependent rect. 11 2
333 61.45 humidity 60.0 14400 < th dose independent rect. 11 1
343 61.48 wind 1.0 90 > th dose independent rect. 6 2
346 61.49 atmosphere 995.0 720 > th dose independent rect. 23 16
347 61.49 wind 5.0 30 < th dose dependent rect. 2 6
352 61.51 humidity 80.0 4320 > th dose independent rect. 7 6
353 61.51 humidity 80.0 4320 < th dose independent rect. 7 6
358 61.51 humidity 50.0 4320 > th dose dependent rect. 3 12
379 61.54 humidity 50.0 4320 > th dose dependent rect. 23 16
384 61.55 humidity 60.0 14400 < th dose dependent rect. 12 1
390 61.55 humidity 90.0 4320 < th dose dependent rect. 3 12
403 61.56 humidity 90.0 4320 < th dose dependent rect. 23 16
408 61.57 humidity 70.0 4320 > th dose independent rect. 4 11
449 61.59 precipitation 0.1 720 < th dose independent rect. 15 16
450 61.59 humidity 50.0 14400 > th dose dependent rect. 8 1
462 61.59 precipitation 0.1 720 < th dose dependent rect. 15 16
485 61.61 humidity 50.0 4320 > th dose dependent sin 4 NA
498 61.62 precipitation 0.1 720 < th dose independent rect. 19 8
499 61.62 radiation 1.0 43200 < th dose dependent rect. 3 1
505 61.62 precipitation 0.1 720 < th dose dependent rect. 19 8
533 61.64 humidity 70.0 4320 > th dose independent sin 4 NA
538 61.64 temperature 10.0 1440 > th dose independent rect. 7 2
542 61.64 humidity 50.0 1440 > th dose independent rect. 7 2
544 61.64 atmosphere 995.0 1440 > th dose independent rect. 7 2
545 61.64 atmosphere 1015.0 1440 < th dose independent rect. 7 2
573 61.64 temperature 10.0 1440 > th dose independent rect. 9 22
576 61.64 humidity 90.0 4320 < th dose dependent sin 4 NA
607 61.66 wind 3.0 30 < th dose independent rect. 2 6
640 61.67 wind 1.0 14400 < th dose dependent rect. 6 1
686 61.69 temperature 10.0 30 > th dose independent rect. 6 2
689 61.69 humidity 50.0 30 > th dose independent rect. 6 2
691 61.69 atmosphere 995.0 30 > th dose independent rect. 6 2
692 61.69 atmosphere 1015.0 30 < th dose independent rect. 6 2
693 61.69 precipitation 0.1 30 < th dose independent rect. 6 2
708 61.69 temperature 10.0 30 > th dose independent rect. 8 22
712 61.69 precipitation 0.1 30 < th dose dependent rect. 6 2
743 61.70 humidity 80.0 4320 < th dose dependent rect. 14 1
753 61.70 atmosphere 995.0 30 > th dose dependent rect. 8 11
791 61.72 humidity 70.0 4320 < th dose independent sin 4 NA
828 61.73 wind 9.0 720 < th dose independent rect. 19 8
965 61.76 wind 9.0 30 < th dose independent rect. 8 22
966 61.76 temperature 30.0 90 < th dose dependent rect. 6 1
967 61.76 atmosphere 995.0 30 > th dose dependent rect. 6 2