FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0862800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : No apical meristem (NAM) protein domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.97 (0.0599) R2 : 0.362
β1 : -1.68 (0.217) R2dD : 0.0902 R2D : 0.101
β2 : 0.378 (0.314) R2dC : 0.0105 R2C : -0.092
β3 : -1.61 (0.254) R2dE : 0.293 R2E : 0.216
β4 : -4.75 (1.31) R2dD*C : 0.115 R2D*C : -0.169
β5 : 5.1 (1.14) R2dD*E : 0.177 R2D*E : -0.0644
γ1 : -0.498 (0.125) R2dN8 : 0.0302 R2N8 : 0.00325
σ : 1.1
deviance : 544.35
__
_____
C
peak time of C : 0.119
E
wheather : wind
threshold : 4.87
memory length : 36
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 15.9
open length of G : 13.9

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
544.35 1.1 4.97 -1.68 0.378 -1.61 -4.75 5.1 -0.498 0.119 4.87 36 15.9 13.9
566.5 1.11 4.96 -1.76 0.166 -1.23 1.35 -- -0.479 5.08 4.701 35 15.6 14.3
564.19 1.11 5.03 -1.67 0.168 -1.44 -- 1.23 -0.557 23.7 5 24 15.9 14.2
566.61 1.11 5.04 -1.72 0.27 -1.55 -- -- -0.619 23.5 5.1 35 15.8 14
563.24 1.11 5.01 -1.71 -- -1.37 -- 1.18 -0.608 -- 4.947 24 15.9 14
619.64 1.17 4.98 -1.92 1.41 -- -0.387 -- -0.495 11.5 -- -- -- --
620.27 1.17 4.98 -1.94 1.41 -- -- -- -0.497 11.4 -- -- -- --
567.04 1.11 5.01 -1.71 -- -1.38 -- -- -0.55 -- 5.1 35 15.6 14.3
641.07 1.18 4.97 -- 0.365 -1.69 -- -- -0.359 23.9 5.295 58 15.5 14.2
744.9 1.28 5.01 -1.97 -- -- -- -- -0.511 -- -- -- -- --
719.23 1.25 4.93 -- 1.43 -- -- -- -0.281 11.5 -- -- -- --
647.86 1.19 5.01 -- -- -1.41 -- -- -0.508 -- 5.017 35 15.6 14.3
847.77 1.36 4.96 -- -- -- -- -- -0.292 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 551.89 wind 5 30 < th dose independent rect. 16 14
2 552.66 wind 5 30 < th dose independent rect. 14 16
3 552.76 radiation 10 720 < th dose independent rect. 14 3
4 554.34 radiation 10 720 < th dose independent rect. 14 1
5 555.38 temperature 20 30 > th dose dependent rect. 5 9
10 557.29 wind 7 720 > th dose independent rect. 17 1
11 557.41 temperature 20 270 > th dose dependent rect. 4 7
14 558.82 wind 7 720 > th dose dependent rect. 14 4
17 559.30 wind 7 720 < th dose independent rect. 14 7
22 559.85 temperature 20 270 > th dose dependent rect. 5 4
25 560.04 wind 5 720 > th dose dependent rect. 17 1
29 560.43 wind 7 720 > th dose independent rect. 14 4
37 561.52 radiation 10 720 < th dose independent rect. 16 1
40 561.68 wind 7 720 > th dose independent rect. 13 9
43 562.17 wind 7 720 > th dose dependent rect. 14 7
60 562.94 wind 5 270 > th dose dependent rect. 17 10
73 563.62 radiation 10 720 < th dose independent rect. 14 10
75 563.75 wind 5 90 > th dose independent rect. 17 11
88 564.33 wind 5 90 > th dose dependent rect. 19 9
89 564.34 wind 7 720 < th dose independent rect. 16 3
107 564.86 wind 7 720 < th dose independent rect. 11 10
131 565.86 wind 5 30 > th dose dependent sin 11 NA
159 566.58 wind 7 720 < th dose independent rect. 11 8
162 566.67 wind 7 720 > th dose independent sin 18 NA
180 566.98 wind 7 720 < th dose independent sin 19 NA
190 567.08 radiation 20 720 < th dose dependent rect. 14 10
192 567.11 radiation 10 720 < th dose dependent rect. 16 9
197 567.23 wind 7 720 < th dose independent rect. 9 12
208 567.45 wind 7 720 > th dose dependent sin 17 NA
226 567.75 wind 7 720 < th dose independent rect. 7 14
243 567.99 wind 7 720 < th dose independent rect. 13 15
254 568.12 radiation 20 720 < th dose dependent rect. 14 3
268 568.27 wind 7 720 < th dose independent rect. 11 17
304 568.66 wind 5 30 > th dose independent sin 11 NA
308 568.76 wind 9 30 < th dose dependent rect. 14 16
320 569.05 radiation 20 720 < th dose dependent rect. 14 1
329 569.14 wind 7 720 < th dose independent rect. 9 19
378 569.82 wind 7 270 > th dose independent sin 13 NA
383 569.88 wind 7 720 < th dose independent rect. 9 14
471 571.05 wind 7 720 < th dose independent rect. 7 21
489 571.25 wind 9 30 < th dose dependent rect. 16 14
563 572.02 temperature 25 10 > th dose dependent sin 6 NA
635 572.55 temperature 25 270 > th dose independent rect. 6 2
784 573.41 temperature 25 270 > th dose independent rect. 5 4
832 573.62 radiation 10 720 > th dose independent rect. 16 2
899 573.96 radiation 10 720 < th dose dependent rect. 16 1
933 574.06 wind 7 720 < th dose independent rect. 24 21
986 574.36 wind 9 720 < th dose dependent rect. 17 2
988 574.37 wind 9 720 < th dose independent rect. 16 23