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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0862500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : IQ calmodulin-binding region domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.29 (0.0255) R2 : 0.0022
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.054 (0.0538) R2dN8 : 0.00285 R2N8 : 0.0022
σ : 0.481
deviance : 106.18
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
92.08 0.451 3.21 0.465 0.319 -0.765 -1.49 5.51 0.108 19.9 25.75 679 -- --
96.57 0.458 3.29 -0.164 0.131 -0.416 -0.985 -- 0.00245 19.5 14.5 3088 -- --
96.84 0.458 3.22 0.423 0.289 -0.897 -- 6.09 0.0163 20.6 27.6 716 -- --
98.19 0.462 3.29 -0.211 0.241 -0.484 -- -- -0.0115 22.3 1.92 968 -- --
100.24 0.466 3.23 0.309 -- -0.722 -- 6.25 -0.018 -- 28.3 686 -- --
99.29 0.467 3.31 -0.373 0.146 -- -0.894 -- -0.0906 20.4 -- -- -- --
101.56 0.472 3.31 -0.349 0.155 -- -- -- -0.0925 21.9 -- -- -- --
99.72 0.465 3.28 -0.206 -- -0.439 -- -- -0.011 -- -4.197 1532 -- --
98.96 0.463 3.28 -- 0.184 -0.49 -- -- 0.0261 22.7 4.172 2709 -- --
103 0.474 3.3 -0.347 -- -- -- -- -0.0925 -- -- -- -- --
104.77 0.479 3.3 -- 0.154 -- -- -- -0.0537 21.8 -- -- -- --
100.41 0.467 3.28 -- -- -0.5 -- -- 0.0319 -- -24.76 6023 -- --
106.18 0.481 3.29 -- -- -- -- -- -0.054 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 83.14 temperature 15.0 30 > th dose independent rect. 3 23
3 88.32 temperature 10.0 30 > th dose dependent rect. 3 23
4 88.40 atmosphere 1015.0 30 < th dose dependent rect. 2 1
5 88.46 temperature 25.0 30 < th dose independent rect. 2 1
6 88.46 temperature 30.0 30 < th dose dependent rect. 2 1
7 88.48 wind 5.0 30 < th dose independent rect. 2 1
9 88.48 wind 3.0 30 < th dose dependent rect. 2 1
15 88.49 temperature 10.0 30 > th dose independent rect. 2 1
18 88.49 humidity 50.0 30 > th dose independent rect. 2 1
21 88.49 atmosphere 995.0 30 > th dose independent rect. 2 1
22 88.49 atmosphere 1010.0 30 < th dose independent rect. 2 1
24 88.49 radiation 1.0 30 < th dose independent rect. 2 1
29 88.49 precipitation 0.1 30 < th dose independent rect. 2 1
31 88.49 humidity 50.0 30 > th dose dependent rect. 2 1
33 88.49 radiation 1.0 30 < th dose dependent rect. 2 1
38 88.49 precipitation 0.1 30 < th dose dependent rect. 2 1
40 88.50 atmosphere 1005.0 30 > th dose dependent rect. 2 1
42 88.51 temperature 10.0 30 > th dose dependent rect. 2 1
50 88.56 atmosphere 995.0 30 > th dose dependent rect. 2 1
55 88.59 atmosphere 1005.0 30 > th dose independent rect. 2 1
61 88.66 wind 1.0 30 > th dose independent rect. 2 1
100 88.81 wind 9.0 30 < th dose independent rect. 3 23
109 89.22 atmosphere 1000.0 30 > th dose independent rect. 3 23
110 89.60 wind 9.0 10 > th dose independent rect. 17 3
114 89.60 wind 9.0 30 > th dose independent rect. 17 9
137 89.61 precipitation 0.1 30 < th dose independent rect. 3 23
138 89.61 precipitation 0.1 30 < th dose dependent rect. 3 23
178 89.82 temperature 15.0 720 > th dose dependent rect. 13 2
179 89.86 wind 7.0 10 > th dose dependent rect. 18 1
198 90.13 atmosphere 1010.0 30 < th dose independent rect. 3 23
230 90.32 temperature 15.0 10 > th dose independent rect. 14 12
248 90.39 temperature 15.0 720 > th dose independent rect. 13 2
250 90.43 wind 7.0 10 > th dose dependent rect. 18 10
264 90.50 radiation 1.0 43200 < th dose dependent rect. 3 1
266 90.54 temperature 25.0 720 > th dose dependent rect. 22 17
268 90.57 temperature 25.0 90 < th dose independent rect. 17 2
272 90.64 temperature 25.0 720 > th dose dependent rect. 2 13
281 90.75 temperature 15.0 720 > th dose dependent rect. 10 5
282 90.76 temperature 15.0 10 > th dose independent rect. 20 6
303 90.90 temperature 15.0 720 > th dose independent rect. 18 7
307 90.92 temperature 15.0 10 > th dose independent rect. 18 23
316 91.05 temperature 15.0 30 > th dose independent rect. 7 23
326 91.15 temperature 15.0 270 > th dose independent rect. 20 13
336 91.20 temperature 25.0 720 > th dose dependent sin 4 NA
338 91.21 temperature 15.0 10 > th dose independent rect. 20 21
347 91.24 wind 9.0 1440 < th dose independent rect. 3 1
348 91.24 temperature 10.0 1440 > th dose independent rect. 3 1
351 91.24 temperature 30.0 1440 < th dose independent rect. 3 1
355 91.24 humidity 50.0 1440 > th dose independent rect. 3 1
364 91.24 atmosphere 995.0 1440 > th dose independent rect. 3 1
365 91.24 radiation 1.0 1440 < th dose independent rect. 3 1
385 91.24 temperature 10.0 1440 > th dose independent rect. 4 23
475 91.33 wind 9.0 10 > th dose independent sin 12 NA
483 91.40 temperature 15.0 720 > th dose independent rect. 12 13
486 91.41 temperature 30.0 720 < th dose dependent rect. 9 9
495 91.50 temperature 15.0 30 > th dose dependent rect. 8 18
498 91.52 wind 9.0 10 < th dose independent sin 12 NA
502 91.57 temperature 15.0 10 > th dose independent rect. 12 14
504 91.58 temperature 25.0 10 < th dose independent rect. 16 4
516 91.63 temperature 25.0 90 < th dose independent rect. 16 5
523 91.64 temperature 30.0 720 < th dose dependent rect. 6 13
543 91.68 temperature 20.0 720 < th dose dependent rect. 11 2
551 91.69 temperature 15.0 1440 > th dose independent rect. 4 20
559 91.72 temperature 25.0 10 < th dose independent rect. 16 12
564 91.75 temperature 15.0 270 > th dose independent rect. 18 22
571 91.78 temperature 15.0 1440 > th dose independent rect. 4 12
615 91.88 radiation 1.0 270 < th dose dependent rect. 17 1
621 91.90 atmosphere 1005.0 10 > th dose dependent rect. 2 6
623 91.90 temperature 10.0 10 > th dose dependent rect. 14 12
625 91.91 temperature 15.0 10 > th dose independent rect. 8 18
649 91.99 temperature 15.0 30 > th dose independent rect. 18 8
673 92.04 temperature 25.0 90 > th dose independent rect. 3 22
674 92.04 temperature 25.0 90 > th dose dependent sin 12 NA
681 92.06 humidity 50.0 30 > th dose independent rect. 3 23
683 92.08 temperature 15.0 1440 > th dose independent rect. 21 3
701 92.14 temperature 15.0 1440 < th dose independent rect. 23 1
715 92.14 temperature 15.0 1440 < th dose dependent rect. 23 1
749 92.19 temperature 30.0 720 < th dose dependent sin 23 NA
755 92.22 temperature 15.0 720 > th dose independent rect. 12 7
759 92.23 temperature 15.0 1440 > th dose independent rect. 4 14
830 92.32 temperature 15.0 1440 > th dose independent sin 19 NA
835 92.33 temperature 25.0 90 > th dose independent rect. 8 17
843 92.35 temperature 15.0 1440 > th dose independent rect. 4 16
849 92.36 temperature 30.0 10 < th dose dependent rect. 17 15
859 92.38 temperature 15.0 4320 < th dose dependent rect. 4 1
871 92.39 temperature 15.0 1440 > th dose independent rect. 9 15
888 92.40 temperature 30.0 720 < th dose dependent rect. 11 3
889 92.41 radiation 10.0 10 > th dose independent rect. 6 1
919 92.41 radiation 10.0 10 > th dose dependent rect. 6 1
943 92.41 radiation 1.0 720 < th dose dependent rect. 17 10
953 92.42 temperature 10.0 720 > th dose dependent sin 23 NA
965 92.44 temperature 10.0 30 > th dose dependent rect. 18 23
989 92.48 temperature 25.0 90 > th dose independent rect. 10 15