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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0861700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.35 (0.0356) R2 : 0.854
β1 : -1.16 (0.13) R2dD : 0.0269 R2D : 0.0127
β2 : 5.15 (0.107) R2dC : 1.14 R2C : 0.724
β3 : 1.38 (0.0945) R2dE : 0.108 R2E : -0.31
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.116 (0.0763) R2dN8 : 0.00102 R2N8 : -0.00247
σ : 0.658
deviance : 199.34
__
_____
C
peak time of C : 21.3
E
wheather : temperature
threshold : 20.14
memory length : 86
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 23.8
open length of G : 19.4

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
198.27 0.662 6.34 -1.09 5.2 1.38 0.789 0.235 0.118 21.3 20.1 83 23.9 19.2
198.18 0.656 6.35 -1.13 5.2 1.39 0.616 -- 0.105 21.3 20.2 81 23.9 19.3
199.36 0.658 6.35 -1.16 5.15 1.39 -- -0.000777 0.112 21.3 20.1 86 23.8 19.4
199.34 0.658 6.35 -1.16 5.15 1.38 -- -- 0.116 21.3 20.14 86 23.8 19.4
315.97 0.828 6.19 -1.4 -- 3.47 -- -2.32 0.237 -- -26.9 594 7.27 17.9
280.76 0.786 6.28 -0.847 4.29 -- 0.334 -- 0.33 20.9 -- -- -- --
281.14 0.785 6.28 -0.858 4.29 -- -- -- 0.33 20.9 -- -- -- --
268.72 0.763 6.15 -0.884 -- 3.77 -- -- 0.353 -- -22.18 616 7.09 17.8
233.31 0.711 6.31 -- 5.09 1.24 -- -- 0.242 21.2 20.2 67 23.9 19.4
1334.11 1.71 6.16 -0.858 -- -- -- -- 0.301 -- -- -- -- --
300.55 0.811 6.25 -- 4.29 -- -- -- 0.426 20.9 -- -- -- --
289.3 0.792 6.13 -- -- 3.78 -- -- 0.451 -- -20.53 613 7.12 17.8
1353.51 1.72 6.14 -- -- -- -- -- 0.396 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 200.42 temperature 20.0 90 > th dose independent rect. 24 19
7 211.41 temperature 10.0 90 > th dose dependent rect. 15 14
9 212.76 temperature 20.0 90 > th dose independent rect. 15 14
10 212.94 temperature 20.0 90 > th dose independent rect. 24 5
14 213.53 temperature 15.0 270 > th dose dependent rect. 22 10
16 213.76 temperature 20.0 270 > th dose dependent rect. 23 6
22 216.24 temperature 20.0 270 > th dose dependent rect. 24 3
34 217.41 temperature 20.0 270 > th dose independent rect. 13 15
36 217.74 temperature 20.0 270 > th dose independent rect. 23 9
42 218.58 temperature 10.0 720 > th dose dependent rect. 15 12
74 220.73 radiation 30.0 90 < th dose independent rect. 13 16
83 221.09 precipitation 0.1 90 < th dose independent rect. 5 10
84 221.09 precipitation 0.1 90 < th dose dependent rect. 5 10
109 222.65 temperature 10.0 90 > th dose independent rect. 5 10
110 222.65 atmosphere 1015.0 90 < th dose independent rect. 5 10
111 222.65 temperature 10.0 90 > th dose independent rect. 15 14
113 222.75 radiation 40.0 90 < th dose independent rect. 15 14
134 223.81 atmosphere 995.0 90 > th dose independent rect. 5 10
140 224.43 atmosphere 995.0 90 > th dose independent rect. 15 14
147 224.87 wind 9.0 90 < th dose independent rect. 5 10
152 224.97 temperature 10.0 90 > th dose dependent rect. 24 19
162 225.27 wind 9.0 90 < th dose independent rect. 15 14
190 226.16 radiation 10.0 30 < th dose dependent rect. 24 19
197 226.54 radiation 1.0 30 < th dose independent rect. 24 19
198 226.56 precipitation 0.1 90 < th dose independent rect. 15 14
199 226.56 precipitation 0.1 90 < th dose dependent rect. 15 14
217 227.15 temperature 30.0 720 < th dose independent rect. 18 13
218 227.16 temperature 10.0 270 > th dose dependent rect. 22 21
221 227.20 radiation 1.0 30 > th dose independent rect. 5 10
232 227.21 temperature 30.0 720 < th dose dependent rect. 19 2
237 227.40 temperature 30.0 90 < th dose dependent rect. 19 16
244 227.69 temperature 30.0 720 < th dose dependent rect. 19 4
277 228.32 radiation 40.0 90 < th dose dependent rect. 13 16
285 228.74 temperature 30.0 270 < th dose dependent rect. 17 16
288 228.81 radiation 1.0 30 > th dose independent sin 2 NA
291 228.84 precipitation 0.1 270 < th dose independent rect. 3 10
292 228.84 precipitation 0.1 270 < th dose dependent rect. 3 10
322 229.43 radiation 1.0 270 < th dose dependent rect. 3 21
339 229.87 radiation 1.0 30 < th dose independent sin 2 NA
342 229.89 temperature 15.0 720 > th dose dependent rect. 17 1
363 230.34 temperature 10.0 720 > th dose dependent rect. 15 18
406 231.27 temperature 10.0 720 > th dose dependent rect. 15 4
415 231.51 temperature 15.0 720 > th dose dependent sin 14 NA
416 231.52 temperature 30.0 720 < th dose independent rect. 18 5
421 231.62 radiation 1.0 270 < th dose independent rect. 3 21
435 231.80 atmosphere 1015.0 90 < th dose independent rect. 15 14
436 231.81 radiation 10.0 14400 > th dose independent rect. 5 1
453 231.90 temperature 10.0 1440 > th dose independent rect. 6 10
456 231.90 humidity 70.0 720 > th dose independent rect. 19 11
457 231.90 temperature 10.0 1440 > th dose independent rect. 16 14
466 232.02 radiation 1.0 270 < th dose dependent rect. 5 18
477 232.23 temperature 10.0 270 > th dose independent rect. 3 10
478 232.23 atmosphere 995.0 270 > th dose independent rect. 3 10
479 232.23 atmosphere 1015.0 270 < th dose independent rect. 3 10
480 232.23 temperature 10.0 270 > th dose independent rect. 13 14
481 232.24 wind 1.0 30 > th dose independent rect. 5 10
498 232.55 radiation 40.0 90 < th dose dependent rect. 15 14
527 232.85 humidity 60.0 270 > th dose independent rect. 17 6
538 232.98 radiation 20.0 4320 < th dose independent rect. 1 5
540 233.00 humidity 70.0 30 > th dose independent rect. 19 5
566 233.24 radiation 1.0 30 < th dose independent rect. 2 17
576 233.48 humidity 50.0 90 > th dose independent rect. 5 10
578 233.50 wind 9.0 270 < th dose independent rect. 3 10
587 233.59 radiation 1.0 270 < th dose independent rect. 5 18
601 233.81 temperature 10.0 1440 > th dose independent rect. 20 5
604 233.81 temperature 30.0 1440 < th dose independent rect. 20 5
608 233.81 humidity 50.0 1440 > th dose independent rect. 20 5
614 233.81 atmosphere 995.0 1440 > th dose independent rect. 20 5
615 233.81 radiation 1.0 1440 < th dose independent rect. 20 5
635 233.81 temperature 10.0 1440 > th dose independent rect. 1 19
638 233.83 radiation 30.0 1440 < th dose dependent rect. 20 5
647 233.94 humidity 70.0 90 > th dose dependent rect. 24 5
675 234.20 precipitation 0.1 270 < th dose independent rect. 13 14
676 234.20 precipitation 0.1 270 < th dose dependent rect. 13 14
682 234.31 radiation 1.0 270 < th dose dependent rect. 16 7
686 234.34 radiation 1.0 270 < th dose independent rect. 16 7
689 234.35 atmosphere 1005.0 90 > th dose independent rect. 24 5
704 234.50 humidity 80.0 90 > th dose independent rect. 24 5
719 234.60 atmosphere 995.0 90 > th dose independent rect. 24 19
723 234.63 humidity 70.0 270 > th dose independent rect. 19 2
730 234.64 atmosphere 1015.0 90 < th dose independent rect. 24 19
734 234.66 temperature 10.0 90 > th dose independent rect. 19 5
735 234.66 temperature 30.0 90 < th dose independent rect. 19 5
736 234.66 humidity 50.0 90 > th dose independent rect. 19 5
738 234.66 atmosphere 995.0 90 > th dose independent rect. 19 5
739 234.66 radiation 1.0 90 < th dose independent rect. 19 5
745 234.66 radiation 1.0 90 < th dose dependent rect. 19 5
751 234.69 wind 9.0 90 < th dose independent rect. 19 5
760 234.75 wind 3.0 270 < th dose independent rect. 24 3
765 234.78 temperature 25.0 720 > th dose independent rect. 15 10
766 234.78 radiation 1.0 30 < th dose independent rect. 24 17
770 234.82 humidity 50.0 270 > th dose independent rect. 3 10
784 234.91 radiation 1.0 30 < th dose dependent sin 2 NA
794 234.99 wind 9.0 270 < th dose independent rect. 19 2
802 235.03 temperature 10.0 270 > th dose independent rect. 19 2
803 235.03 temperature 30.0 270 < th dose independent rect. 19 2
804 235.03 humidity 50.0 270 > th dose independent rect. 19 2
805 235.03 atmosphere 995.0 270 > th dose independent rect. 19 2
806 235.03 radiation 1.0 270 < th dose independent rect. 19 2
812 235.03 radiation 1.0 270 < th dose dependent rect. 19 2
818 235.04 radiation 10.0 30 < th dose dependent rect. 2 17
848 235.29 precipitation 0.1 90 < th dose independent rect. 19 5
850 235.29 precipitation 0.1 90 < th dose dependent rect. 19 5
892 235.58 precipitation 0.1 270 < th dose independent rect. 19 2
893 235.58 precipitation 0.1 270 < th dose dependent rect. 19 2
899 235.61 wind 9.0 90 < th dose independent rect. 24 19
901 235.65 wind 3.0 30 < th dose dependent rect. 24 5
914 235.74 wind 9.0 270 < th dose independent rect. 13 14
921 235.77 temperature 20.0 270 > th dose independent rect. 12 21
928 235.81 precipitation 0.1 90 < th dose independent rect. 24 19
929 235.81 precipitation 0.1 90 < th dose dependent rect. 24 19
948 235.97 humidity 50.0 30 > th dose dependent rect. 19 5
967 236.11 radiation 10.0 30 < th dose dependent rect. 24 14
981 236.22 radiation 1.0 270 < th dose dependent rect. 8 15
990 236.26 radiation 1.0 270 < th dose independent rect. 8 15
993 236.27 wind 1.0 270 > th dose independent rect. 19 2