Os01g0860800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Glycoside hydrolase, family 17 protein.
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Os01g0860800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Glycoside hydrolase, family 17 protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 126.15 | 0.528 | 8.91 | -0.536 | 3 | -1.95 | 0.704 | 0.0581 | 0.102 | 16.3 | 13.95 | 30 | 5.17 | 16.6 |
| 126.02 | 0.523 | 8.91 | -0.548 | 3 | -1.95 | 0.717 | -- | 0.102 | 16.2 | 13.51 | 29 | 5.2 | 16.6 |
| 126.76 | 0.524 | 8.91 | -0.508 | 2.98 | -1.91 | -- | 0.582 | 0.108 | 16.2 | 13.26 | 28 | 5.21 | 16.6 |
| 127.39 | 0.526 | 8.91 | -0.544 | 3.01 | -1.93 | -- | -- | 0.098 | 16.2 | 12.89 | 28 | 5.18 | 16.6 |
| 359.74 | 0.883 | 8.88 | -0.573 | -- | -1.02 | -- | 0.109 | 0.0293 | -- | 14.58 | 1366 | 5.22 | 16.5 |
| 173.68 | 0.618 | 8.96 | -0.813 | 1.96 | -- | 0.769 | -- | -0.0935 | 17.8 | -- | -- | -- | -- |
| 175.09 | 0.62 | 8.96 | -0.817 | 1.97 | -- | -- | -- | -0.0901 | 17.7 | -- | -- | -- | -- |
| 281.79 | 0.782 | 8.83 | -0.206 | -- | -1.03 | -- | -- | 0.178 | -- | 20.27 | 990 | 18.4 | 5.07 |
| 134.88 | 0.541 | 8.89 | -- | 3.03 | -2.06 | -- | -- | 0.169 | 16.2 | 14.2 | 21 | 5.25 | 16.6 |
| 376.1 | 0.906 | 8.93 | -0.88 | -- | -- | -- | -- | -0.137 | -- | -- | -- | -- | -- |
| 192.7 | 0.649 | 8.93 | -- | 1.98 | -- | -- | -- | 0.000972 | 17.7 | -- | -- | -- | -- |
| 172.52 | 0.612 | 8.87 | -- | -- | -2.35 | -- | -- | 0.318 | -- | 10.37 | 446 | 22.6 | 8.33 |
| 396.51 | 0.929 | 8.9 | -- | -- | -- | -- | -- | -0.0393 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 129.76 | temperature | 15 | 30 | > th | dose dependent | rect. | 5 | 17 |
| 2 | 130.26 | temperature | 30 | 90 | < th | dose dependent | rect. | 7 | 10 |
| 3 | 130.28 | temperature | 30 | 90 | < th | dose dependent | rect. | 7 | 8 |
| 16 | 133.27 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 1 |
| 39 | 136.45 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 3 |
| 65 | 137.40 | temperature | 25 | 270 | < th | dose independent | rect. | 6 | 7 |
| 89 | 138.03 | temperature | 20 | 720 | > th | dose dependent | rect. | 5 | 1 |
| 106 | 138.29 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 10 |
| 111 | 138.43 | temperature | 15 | 720 | > th | dose dependent | rect. | 3 | 3 |
| 199 | 140.32 | temperature | 15 | 270 | > th | dose dependent | rect. | 2 | 9 |
| 221 | 140.90 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 2 |
| 222 | 140.90 | temperature | 25 | 10 | > th | dose independent | rect. | 5 | 16 |
| 258 | 141.45 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 1 |
| 268 | 141.55 | temperature | 20 | 720 | < th | dose independent | rect. | 4 | 3 |
| 311 | 142.13 | temperature | 25 | 720 | < th | dose dependent | sin | 6 | NA |
| 360 | 143.04 | radiation | 1 | 90 | > th | dose independent | rect. | 18 | 12 |
| 364 | 143.09 | temperature | 25 | 720 | < th | dose independent | rect. | 7 | 1 |
| 435 | 143.86 | temperature | 15 | 90 | > th | dose dependent | rect. | 5 | 1 |
| 505 | 144.45 | radiation | 1 | 90 | > th | dose independent | rect. | 5 | 1 |
| 546 | 144.75 | temperature | 15 | 30 | > th | dose dependent | rect. | 22 | 7 |
| 558 | 144.88 | temperature | 30 | 30 | < th | dose independent | rect. | 7 | 22 |
| 563 | 144.93 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 7 |
| 607 | 145.26 | temperature | 20 | 30 | > th | dose independent | rect. | 22 | 7 |
| 721 | 146.27 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 16 |
| 788 | 146.69 | atmosphere | 1015 | 30 | < th | dose independent | rect. | 7 | 22 |
| 854 | 147.11 | temperature | 15 | 720 | > th | dose dependent | sin | 6 | NA |
| 855 | 147.11 | wind | 5 | 30 | < th | dose dependent | rect. | 5 | 2 |
| 864 | 147.17 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 8 |
| 888 | 147.33 | radiation | 10 | 90 | < th | dose independent | rect. | 5 | 1 |
| 889 | 147.33 | wind | 3 | 30 | < th | dose independent | rect. | 5 | 6 |
| 914 | 147.45 | wind | 3 | 30 | < th | dose independent | rect. | 5 | 2 |
| 928 | 147.50 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 1 |
| 986 | 147.76 | temperature | 30 | 30 | < th | dose dependent | sin | 1 | NA |