Os01g0859600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cyclin-like F-box domain containing protein.
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Os01g0859600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cyclin-like F-box domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 40.19 | 0.298 | 8.61 | 0.684 | 0.354 | -1.55 | -1.21 | 3.82 | 0.39 | 13.2 | 20.86 | 281 | -- | -- |
| 43.72 | 0.308 | 8.67 | 0.1 | 0.0233 | -1.53 | 1.5 | -- | 0.28 | 21.4 | 16.2 | 643 | -- | -- |
| 42.48 | 0.304 | 8.62 | 0.576 | 0.104 | -1.59 | -- | 2.73 | 0.352 | 2.29 | 16.68 | 721 | -- | -- |
| 48.9 | 0.326 | 8.69 | 0.0145 | 0.0828 | -1.66 | -- | -- | 0.199 | 1.65 | 14.8 | 707 | -- | -- |
| 42.72 | 0.304 | 8.62 | 0.562 | -- | -1.59 | -- | 2.84 | 0.353 | -- | 16.6 | 650 | -- | -- |
| 80.02 | 0.419 | 8.74 | -0.346 | 0.376 | -- | -1.14 | -- | -0.0472 | 8.29 | -- | -- | -- | -- |
| 83.72 | 0.428 | 8.74 | -0.384 | 0.391 | -- | -- | -- | -0.0486 | 7.57 | -- | -- | -- | -- |
| 49.14 | 0.326 | 8.69 | 0.0288 | -- | -1.64 | -- | -- | 0.2 | -- | 14.9 | 649 | -- | -- |
| 48.84 | 0.325 | 8.69 | -- | 0.151 | -1.59 | -- | -- | 0.201 | 3.08 | 15.16 | 778 | -- | -- |
| 91.94 | 0.448 | 8.75 | -0.378 | -- | -- | -- | -- | -0.0426 | -- | -- | -- | -- | -- |
| 87.6 | 0.438 | 8.73 | -- | 0.388 | -- | -- | -- | -0.00588 | 7.64 | -- | -- | -- | -- |
| 49.15 | 0.327 | 8.69 | -- | -- | -1.63 | -- | -- | 0.201 | -- | 14.9 | 648 | -- | -- |
| 95.71 | 0.457 | 8.74 | -- | -- | -- | -- | -- | -0.000677 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.87 | temperature | 20 | 720 | > th | dose dependent | sin | 7 | NA |
| 2 | 30.36 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 16 |
| 52 | 34.95 | temperature | 30 | 720 | < th | dose dependent | sin | 7 | NA |
| 62 | 35.13 | temperature | 30 | 720 | < th | dose dependent | rect. | 20 | 16 |
| 249 | 38.49 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 22 |
| 256 | 38.57 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 9 |
| 273 | 38.85 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 4 |
| 378 | 39.71 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 13 |
| 409 | 39.83 | temperature | 20 | 1440 | > th | dose dependent | sin | 13 | NA |
| 508 | 40.29 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 535 | 40.43 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 589 | 40.70 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 4 |
| 620 | 40.82 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |
| 702 | 41.14 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 23 |
| 705 | 41.15 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 23 |
| 793 | 41.42 | humidity | 90 | 43200 | > th | dose dependent | rect. | 22 | 1 |
| 815 | 41.51 | humidity | 90 | 43200 | < th | dose independent | rect. | 21 | 2 |
| 961 | 42.02 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 982 | 42.08 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 983 | 42.08 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 8 |