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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0859500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Basic leucine zipper protein (Liguleless2).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.83 (0.0423) R2 : 0.34
β1 : 1.38 (0.155) R2dD : 0.12 R2D : 0.0333
β2 : 0.882 (0.101) R2dC : 0.111 R2C : 0.0762
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.906 (0.0902) R2dN8 : 0.196 R2N8 : 0.105
σ : 0.794
deviance : 287.8
__
_____
C
peak time of C : 1.02
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
265.31 0.765 4.77 1.59 0.523 1.2 -2.26 -1.79 1.03 11.9 0.8092 106 -- --
269.74 0.765 4.79 1.44 0.56 1.25 -0.846 -- 0.954 11.9 1.93 84 -- --
267.16 0.761 4.78 1.46 0.6 1.26 -- 0.0612 1.01 12.2 1.479 107 -- --
267.19 0.761 4.78 1.46 0.611 1.27 -- -- 1 12.2 1.39 107 -- --
272.09 0.768 4.8 1.46 -- 0.872 -- 0.546 1.01 -- 2.261 105 -- --
287.23 0.795 4.82 1.39 0.883 -- 0.371 -- 0.908 1.01 -- -- -- --
287.8 0.794 4.83 1.38 0.882 -- -- -- 0.906 1.02 -- -- -- --
270.42 0.766 4.8 1.44 -- 0.815 -- -- 0.978 -- 1.248 105 -- --
321.81 0.836 4.82 -- 0.382 1.08 -- -- 0.837 11.4 2.513 97 -- --
336.22 0.857 4.81 1.41 -- -- -- -- 0.923 -- -- -- -- --
338.01 0.86 4.86 -- 0.905 -- -- -- 0.752 1.08 -- -- -- --
323.71 0.838 4.84 -- -- 0.81 -- -- 0.814 -- 2.498 94 -- --
388.92 0.921 4.85 -- -- -- -- -- 0.767 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 252.44 radiation 1.0 90 > th dose independent rect. 17 23
2 255.05 radiation 1.0 720 < th dose dependent rect. 23 20
3 257.62 temperature 20.0 30 > th dose dependent rect. 22 10
7 258.30 radiation 1.0 4320 < th dose independent rect. 18 5
9 258.47 radiation 1.0 4320 < th dose independent rect. 18 2
12 258.51 radiation 1.0 720 < th dose independent rect. 23 20
14 258.58 radiation 1.0 4320 < th dose independent rect. 18 9
18 258.88 radiation 1.0 720 < th dose dependent rect. 7 12
31 259.80 humidity 90.0 43200 < th dose independent rect. 5 1
32 259.90 radiation 1.0 4320 < th dose independent rect. 17 13
33 259.92 radiation 1.0 4320 > th dose independent rect. 17 2
45 260.11 radiation 1.0 4320 < th dose dependent rect. 4 1
47 260.31 radiation 1.0 4320 > th dose independent rect. 17 13
60 260.47 radiation 1.0 4320 < th dose dependent rect. 2 3
61 260.48 radiation 10.0 14400 < th dose independent rect. 9 1
69 261.01 radiation 1.0 720 > th dose independent rect. 11 20
70 261.06 radiation 1.0 4320 < th dose dependent rect. 18 12
71 261.09 radiation 1.0 90 < th dose dependent rect. 23 23
76 261.31 wind 1.0 43200 < th dose independent rect. 5 2
78 261.48 radiation 20.0 14400 < th dose independent rect. 23 8
79 261.59 radiation 1.0 90 < th dose independent rect. 23 23
82 261.69 radiation 1.0 720 < th dose independent rect. 7 12
84 261.71 radiation 1.0 720 < th dose dependent rect. 13 6
85 261.73 radiation 1.0 4320 < th dose dependent rect. 24 6
88 261.76 radiation 20.0 14400 > th dose independent rect. 17 14
91 261.79 radiation 20.0 14400 < th dose independent rect. 6 1
93 261.79 radiation 1.0 4320 < th dose dependent rect. 21 9
103 261.93 radiation 20.0 14400 < th dose independent rect. 18 13
109 261.98 precipitation 0.1 14400 > th dose dependent rect. 11 7
111 262.03 radiation 20.0 14400 < th dose independent rect. 11 2
112 262.05 radiation 20.0 14400 < th dose independent rect. 3 4
121 262.29 radiation 1.0 720 < th dose dependent rect. 17 2
126 262.38 wind 1.0 43200 > th dose independent rect. 5 1
130 262.51 precipitation 0.1 14400 < th dose independent rect. 11 7
131 262.51 precipitation 0.1 14400 < th dose dependent rect. 11 7
136 262.61 radiation 1.0 720 < th dose dependent rect. 7 21
137 262.63 precipitation 0.1 14400 > th dose dependent rect. 14 4
142 262.70 precipitation 0.1 14400 > th dose independent rect. 11 7
144 262.75 humidity 90.0 43200 > th dose independent rect. 5 1
147 262.80 radiation 20.0 14400 > th dose independent rect. 6 1
165 262.88 radiation 1.0 4320 < th dose dependent rect. 18 5
168 262.92 radiation 1.0 4320 < th dose dependent rect. 18 1
171 262.96 radiation 1.0 4320 < th dose dependent rect. 18 9
194 263.13 precipitation 0.1 14400 < th dose independent rect. 11 11
197 263.13 precipitation 0.1 14400 < th dose dependent rect. 11 11
207 263.18 precipitation 0.1 14400 > th dose dependent rect. 11 11
208 263.19 precipitation 0.1 14400 > th dose independent rect. 11 11
231 263.39 precipitation 0.1 14400 < th dose independent rect. 15 3
234 263.39 precipitation 0.1 14400 < th dose dependent rect. 15 3
237 263.40 precipitation 0.1 14400 < th dose independent rect. 17 2
238 263.40 humidity 90.0 14400 < th dose independent rect. 1 3
239 263.40 precipitation 0.1 14400 < th dose dependent rect. 17 2
243 263.42 precipitation 0.1 14400 > th dose independent rect. 14 4
259 263.55 precipitation 0.1 14400 > th dose independent rect. 17 2
269 263.65 radiation 1.0 720 < th dose independent rect. 7 21
272 263.66 precipitation 0.1 14400 > th dose dependent rect. 14 8
291 263.79 precipitation 0.1 14400 > th dose independent rect. 14 8
293 263.82 precipitation 0.1 14400 < th dose independent rect. 14 8
294 263.82 radiation 10.0 14400 < th dose independent rect. 18 18
295 263.82 precipitation 0.1 14400 < th dose dependent rect. 14 8
299 263.87 radiation 10.0 14400 < th dose independent rect. 4 8
311 263.87 radiation 40.0 14400 > th dose dependent rect. 7 2
348 263.94 precipitation 0.1 14400 > th dose dependent sin 20 NA
370 264.01 precipitation 0.1 14400 > th dose dependent rect. 17 2
379 264.06 wind 7.0 1440 < th dose independent rect. 23 1
387 264.07 radiation 20.0 14400 < th dose dependent rect. 11 1
394 264.11 wind 9.0 4320 > th dose dependent rect. 12 1
395 264.12 radiation 1.0 720 < th dose independent rect. 14 5
404 264.16 precipitation 0.1 14400 > th dose dependent rect. 17 5
408 264.18 humidity 90.0 14400 > th dose independent rect. 24 4
411 264.19 radiation 1.0 720 < th dose independent rect. 16 3
418 264.22 precipitation 0.1 14400 > th dose independent sin 20 NA
419 264.22 precipitation 0.1 14400 < th dose independent sin 20 NA
431 264.22 precipitation 0.1 14400 < th dose dependent sin 20 NA
480 264.33 radiation 10.0 14400 < th dose independent sin 4 NA
495 264.41 radiation 10.0 14400 < th dose independent rect. 8 22
496 264.41 radiation 20.0 14400 < th dose dependent rect. 8 1
501 264.42 radiation 1.0 90 < th dose dependent rect. 3 23
505 264.44 radiation 10.0 14400 < th dose independent rect. 8 13
506 264.44 radiation 10.0 14400 < th dose independent rect. 8 16
526 264.46 radiation 1.0 720 > th dose independent rect. 11 7
553 264.53 precipitation 0.1 14400 > th dose independent rect. 17 5
554 264.53 precipitation 0.1 14400 < th dose independent rect. 17 5
558 264.53 precipitation 0.1 14400 < th dose dependent rect. 17 5
612 264.64 atmosphere 995.0 43200 < th dose independent rect. 13 17
615 264.66 wind 9.0 43200 < th dose independent rect. 24 1
651 264.75 atmosphere 1010.0 14400 > th dose dependent rect. 1 1
652 264.75 radiation 20.0 14400 < th dose dependent rect. 7 6
669 264.79 atmosphere 995.0 43200 > th dose independent rect. 13 19
673 264.79 atmosphere 1010.0 14400 > th dose dependent rect. 5 1
691 264.82 humidity 80.0 1440 < th dose independent rect. 11 2
708 264.85 radiation 20.0 14400 < th dose dependent rect. 4 9
712 264.85 radiation 20.0 14400 < th dose dependent rect. 23 14
757 264.94 radiation 10.0 14400 < th dose independent no NA NA
860 264.98 temperature 20.0 720 > th dose dependent rect. 22 1
881 265.02 atmosphere 1010.0 14400 > th dose dependent rect. 1 5
905 265.04 humidity 80.0 1440 > th dose independent rect. 11 3
930 265.09 humidity 60.0 14400 < th dose independent rect. 12 1
954 265.11 atmosphere 995.0 43200 < th dose independent sin 15 NA
964 265.13 atmosphere 995.0 43200 < th dose dependent rect. 14 12