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Os01g0857400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Amino acid/polyamine transporter II family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.73 (0.0308) R2 : 0.559
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.37 (0.081) R2dC : 0.302 R2C : 0.4
β3 : 1.34 (0.109) R2dE : 0.156 R2E : 0.253
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.139 (0.0651) R2dN8 : 0.00684 R2N8 : -0.00118
σ : 0.579
deviance : 154.54
__
_____
C
peak time of C : 3.98
E
wheather : radiation
threshold : 0.8001
memory length : 49
response mode : > th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 3.96
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
143.2 0.562 7.73 0.251 1.42 1.26 -1.74 -0.488 -0.131 4.2 0.8 48 4.13 --
143.39 0.558 7.72 0.275 1.42 1.24 -1.78 -- -0.124 4.24 0.81 48 4.15 --
151.03 0.572 7.74 0.264 1.38 1.33 -- -0.842 -0.134 3.9 0.8098 48 3.88 --
152.29 0.575 7.72 0.286 1.38 1.33 -- -- -0.121 3.96 0.8026 49 3.93 --
175.17 0.616 7.73 0.279 -- 1.76 -- -2.11 -0.0663 -- -20.18 295 3.3 --
175.17 0.62 7.7 0.316 1.76 -- -2.11 -- -0.066 5.16 -- -- -- --
186.36 0.639 7.69 0.316 1.75 -- -- -- -0.0561 5.15 -- -- -- --
186.36 0.636 7.72 0.316 -- 1.75 -- -- -0.0562 -- -20 303 3.38 --
154.54 0.579 7.73 -- 1.37 1.34 -- -- -0.139 3.98 0.8001 49 3.96 --
346.31 0.87 7.71 0.378 -- -- -- -- -0.0119 -- -- -- -- --
188.99 0.643 7.7 -- 1.75 -- -- -- -0.0913 5.14 -- -- -- --
188.99 0.64 7.73 -- -- 1.75 -- -- -0.0915 -- -20.4 310 3.44 --
350.08 0.873 7.72 -- -- -- -- -- -0.0539 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 135.16 temperature 15.0 270 > th dose independent rect. 3 17
2 135.55 atmosphere 995.0 270 > th dose dependent rect. 22 4
3 135.63 atmosphere 995.0 270 > th dose dependent rect. 21 6
5 135.96 radiation 1.0 30 < th dose dependent rect. 22 19
7 136.16 temperature 10.0 90 > th dose dependent rect. 4 18
10 136.46 radiation 30.0 270 < th dose independent rect. 2 7
11 136.47 precipitation 0.1 270 < th dose independent rect. 20 7
12 136.47 precipitation 0.1 270 < th dose dependent rect. 20 7
13 136.60 wind 9.0 270 < th dose independent rect. 20 7
14 136.64 temperature 10.0 270 > th dose independent rect. 20 7
15 136.64 temperature 30.0 270 < th dose independent rect. 20 7
16 136.64 humidity 50.0 270 > th dose independent rect. 20 7
19 136.64 atmosphere 995.0 270 > th dose independent rect. 20 7
20 136.64 radiation 1.0 270 < th dose independent rect. 20 7
26 136.64 atmosphere 1015.0 270 < th dose independent rect. 3 17
27 136.64 radiation 1.0 270 < th dose dependent rect. 20 7
32 136.72 temperature 15.0 270 > th dose independent rect. 2 19
37 137.15 radiation 1.0 30 < th dose independent rect. 22 19
40 137.40 wind 9.0 270 < th dose independent rect. 3 17
43 137.71 radiation 1.0 30 < th dose dependent rect. 22 16
45 137.74 humidity 50.0 270 > th dose independent rect. 7 9
46 137.74 precipitation 0.1 270 < th dose independent rect. 3 17
47 137.74 precipitation 0.1 270 < th dose dependent rect. 3 17
49 137.82 temperature 10.0 1440 > th dose independent rect. 23 6
52 137.82 temperature 30.0 1440 < th dose independent rect. 23 6
56 137.82 humidity 50.0 1440 > th dose independent rect. 23 6
65 137.82 atmosphere 995.0 1440 > th dose independent rect. 23 6
66 137.82 radiation 20.0 1440 < th dose independent rect. 23 6
78 137.82 temperature 10.0 1440 > th dose independent rect. 5 18
81 137.88 wind 7.0 90 < th dose independent rect. 22 6
82 137.90 radiation 1.0 30 < th dose dependent rect. 22 14
84 137.91 atmosphere 1005.0 270 > th dose independent rect. 22 3
85 138.00 radiation 1.0 30 < th dose dependent rect. 22 10
91 138.10 radiation 1.0 30 < th dose dependent rect. 22 8
92 138.11 radiation 1.0 30 < th dose independent rect. 22 8
93 138.11 atmosphere 995.0 270 > th dose independent rect. 3 17
96 138.13 temperature 10.0 90 > th dose independent rect. 22 6
97 138.13 temperature 30.0 90 < th dose independent rect. 22 6
98 138.13 humidity 50.0 90 > th dose independent rect. 22 6
101 138.13 atmosphere 995.0 90 > th dose independent rect. 22 6
102 138.13 radiation 1.0 90 < th dose independent rect. 22 6
109 138.13 radiation 1.0 90 < th dose dependent rect. 22 6
116 138.28 precipitation 0.1 90 < th dose independent rect. 22 6
118 138.28 precipitation 0.1 90 < th dose dependent rect. 22 6
119 138.29 radiation 30.0 270 < th dose independent rect. 16 15
123 138.39 temperature 10.0 270 > th dose independent rect. 7 9
124 138.39 atmosphere 1015.0 270 < th dose independent rect. 7 9
125 138.39 temperature 10.0 270 > th dose independent rect. 16 15
129 138.47 wind 9.0 270 < th dose independent rect. 16 15
131 138.52 radiation 1.0 30 < th dose independent rect. 22 16
133 138.54 precipitation 0.1 270 < th dose independent rect. 7 9
134 138.54 precipitation 0.1 270 < th dose dependent rect. 7 9
146 138.55 wind 9.0 270 < th dose independent rect. 7 9
154 138.57 wind 9.0 1440 < th dose independent rect. 23 6
174 138.67 radiation 40.0 270 < th dose dependent rect. 2 7
176 138.72 temperature 15.0 270 > th dose independent rect. 1 21
177 138.73 radiation 1.0 30 < th dose independent rect. 22 14
184 138.80 atmosphere 1015.0 270 < th dose independent rect. 2 19
211 138.94 wind 7.0 270 < th dose independent rect. 22 3
217 139.13 precipitation 0.1 270 < th dose independent rect. 22 3
218 139.13 precipitation 0.1 270 < th dose dependent rect. 22 3
222 139.21 atmosphere 995.0 270 > th dose independent rect. 16 15
224 139.23 temperature 10.0 270 > th dose independent rect. 22 3
225 139.23 temperature 30.0 270 < th dose independent rect. 22 3
226 139.23 humidity 50.0 270 > th dose independent rect. 22 3
229 139.23 atmosphere 995.0 270 > th dose independent rect. 22 3
230 139.23 radiation 1.0 270 < th dose independent rect. 22 3
237 139.23 radiation 1.0 270 < th dose dependent rect. 22 3
248 139.37 wind 9.0 270 < th dose independent rect. 2 19
272 139.70 precipitation 0.1 270 < th dose independent rect. 2 19
275 139.70 precipitation 0.1 270 < th dose dependent rect. 2 19
297 139.83 humidity 70.0 270 > th dose independent rect. 2 7
299 139.86 wind 9.0 270 < th dose dependent rect. 21 5
305 139.97 precipitation 0.1 270 < th dose independent rect. 16 15
306 139.97 atmosphere 995.0 270 > th dose independent rect. 2 19
307 139.97 precipitation 0.1 270 < th dose dependent rect. 16 15
308 139.99 wind 9.0 270 < th dose dependent rect. 22 3
309 140.00 precipitation 0.1 270 < th dose independent rect. 9 17
310 140.00 precipitation 0.1 270 < th dose dependent rect. 9 17
315 140.11 humidity 50.0 270 > th dose independent rect. 8 18
320 140.14 radiation 40.0 270 < th dose dependent rect. 16 15
322 140.18 precipitation 0.1 270 < th dose independent rect. 7 20
323 140.18 precipitation 0.1 270 < th dose dependent rect. 7 20
324 140.21 wind 1.0 270 > th dose independent rect. 20 7
334 140.30 atmosphere 995.0 270 > th dose independent rect. 7 9
341 140.43 precipitation 0.1 270 < th dose independent rect. 2 7
342 140.43 precipitation 0.1 270 < th dose dependent rect. 2 7
347 140.49 humidity 50.0 270 > th dose independent rect. 7 20
350 140.54 wind 9.0 270 < th dose independent rect. 1 21
352 140.57 temperature 30.0 270 < th dose independent rect. 2 7
359 140.66 temperature 10.0 270 > th dose dependent rect. 2 6
364 140.69 wind 9.0 270 < th dose independent rect. 2 7
365 140.69 temperature 10.0 270 > th dose independent rect. 2 7
368 140.69 atmosphere 995.0 270 > th dose independent rect. 2 7
369 140.69 atmosphere 1015.0 270 < th dose independent rect. 2 7
370 140.69 temperature 10.0 270 > th dose independent rect. 9 17
371 140.71 precipitation 0.1 270 < th dose independent rect. 3 4
372 140.71 precipitation 0.1 270 < th dose dependent rect. 3 4
375 140.75 wind 9.0 270 < th dose dependent rect. 20 7
399 140.82 precipitation 0.1 270 < th dose independent rect. 1 21
400 140.82 precipitation 0.1 270 < th dose dependent rect. 1 21
402 140.87 radiation 20.0 270 < th dose independent rect. 3 4
407 140.89 radiation 10.0 270 < th dose dependent rect. 3 17
422 140.95 humidity 70.0 270 > th dose independent rect. 3 4
424 140.98 wind 9.0 270 < th dose independent rect. 9 17
428 141.05 wind 9.0 270 < th dose independent rect. 3 4
429 141.05 temperature 10.0 270 > th dose independent rect. 3 4
431 141.05 temperature 30.0 270 < th dose independent rect. 3 4
432 141.05 humidity 50.0 270 > th dose independent rect. 3 4
434 141.05 atmosphere 995.0 270 > th dose independent rect. 3 4
435 141.05 atmosphere 1015.0 270 < th dose independent rect. 3 4
437 141.05 temperature 10.0 270 > th dose independent rect. 7 20
440 141.06 temperature 10.0 270 > th dose dependent rect. 4 2
444 141.10 wind 9.0 270 < th dose independent rect. 7 20
448 141.17 temperature 10.0 90 > th dose dependent rect. 22 6
454 141.27 radiation 40.0 1440 < th dose dependent rect. 23 6
458 141.32 temperature 10.0 270 > th dose independent rect. 13 9
459 141.32 temperature 10.0 270 > th dose independent rect. 22 15
460 141.32 atmosphere 995.0 270 > th dose independent rect. 22 15
470 141.38 temperature 20.0 270 > th dose independent rect. 14 7
494 141.46 wind 9.0 270 < th dose independent rect. 22 15
495 141.46 humidity 50.0 270 > th dose dependent rect. 3 4
496 141.47 precipitation 0.1 270 < th dose independent rect. 4 2
497 141.47 precipitation 0.1 270 < th dose dependent rect. 4 2
498 141.49 atmosphere 1015.0 270 < th dose independent rect. 1 21
500 141.54 atmosphere 995.0 270 > th dose independent rect. 1 21
519 141.67 wind 1.0 270 > th dose independent rect. 22 3
521 141.69 wind 7.0 270 < th dose independent rect. 4 2
525 141.70 temperature 10.0 270 > th dose independent rect. 4 2
527 141.70 temperature 30.0 270 < th dose independent rect. 4 2
528 141.70 humidity 50.0 270 > th dose independent rect. 4 2
531 141.70 atmosphere 995.0 270 > th dose independent rect. 4 2
532 141.70 atmosphere 1015.0 270 < th dose independent rect. 4 2
533 141.70 radiation 20.0 270 < th dose independent rect. 4 2
537 141.70 temperature 10.0 270 > th dose independent rect. 6 22
554 141.77 wind 9.0 270 < th dose dependent rect. 3 4
556 141.81 atmosphere 1015.0 90 < th dose independent rect. 22 6
572 141.93 radiation 40.0 270 < th dose dependent rect. 4 2
574 141.96 wind 9.0 270 < th dose independent rect. 6 22
575 141.96 humidity 50.0 270 > th dose dependent rect. 4 2
614 142.14 humidity 50.0 90 > th dose dependent rect. 22 6
625 142.15 humidity 50.0 270 > th dose dependent rect. 2 7
636 142.27 precipitation 0.1 270 < th dose independent rect. 22 15
637 142.27 precipitation 0.1 270 < th dose dependent rect. 22 15
638 142.28 atmosphere 1015.0 270 < th dose independent rect. 22 3
649 142.36 wind 1.0 270 > th dose independent rect. 13 9
657 142.41 radiation 40.0 30 < th dose dependent rect. 5 17
659 142.42 wind 9.0 270 < th dose independent rect. 13 9
670 142.51 temperature 10.0 270 > th dose dependent rect. 22 3
702 142.60 wind 9.0 270 < th dose dependent rect. 4 2
820 142.87 temperature 10.0 1440 > th dose independent rect. 5 5
823 142.87 atmosphere 995.0 1440 > th dose independent rect. 5 5
824 142.87 atmosphere 1015.0 1440 < th dose independent rect. 5 5
825 142.87 temperature 10.0 1440 > th dose independent rect. 10 19
830 142.88 radiation 20.0 90 < th dose independent rect. 4 18
831 142.88 radiation 40.0 90 < th dose independent rect. 4 18
833 142.89 wind 9.0 270 < th dose independent rect. 21 17
845 142.93 temperature 10.0 270 > th dose independent rect. 14 7
846 142.93 temperature 10.0 270 > th dose independent rect. 21 17
847 142.93 atmosphere 995.0 270 > th dose independent rect. 21 17
872 143.08 humidity 50.0 270 > th dose dependent rect. 22 3
927 143.28 atmosphere 1015.0 270 < th dose independent rect. 14 7
928 143.28 humidity 50.0 270 > th dose independent rect. 22 15
937 143.34 wind 9.0 270 < th dose independent rect. 14 7
966 143.40 atmosphere 1015.0 270 < th dose dependent rect. 3 3
973 143.50 atmosphere 1015.0 270 < th dose independent rect. 13 9
975 143.51 precipitation 0.1 270 < th dose independent rect. 13 9
977 143.51 precipitation 0.1 270 < th dose dependent rect. 13 9
985 143.54 precipitation 0.1 270 < th dose independent rect. 21 17
987 143.54 precipitation 0.1 270 < th dose dependent rect. 21 17