Os01g0857300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 3-deoxy-D-manno-octulosonic acid transferase-like protein.
FiT-DB / Search/ Help/ Sample detail
|
Os01g0857300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to 3-deoxy-D-manno-octulosonic acid transferase-like protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31.31 | 0.263 | 8.82 | -0.651 | 0.595 | -0.775 | -0.0134 | -0.244 | -0.000391 | 2.19 | 19.26 | 90 | -- | -- |
| 31.36 | 0.261 | 8.82 | -0.613 | 0.591 | -0.791 | 0.0559 | -- | 0.00263 | 2.13 | 19.32 | 92 | -- | -- |
| 31.31 | 0.261 | 8.82 | -0.648 | 0.595 | -0.775 | -- | -0.228 | 0.000452 | 2.19 | 19.28 | 90 | -- | -- |
| 31.35 | 0.261 | 8.82 | -0.609 | 0.591 | -0.785 | -- | -- | 0.0133 | 2.24 | 19.4 | 76 | -- | -- |
| 44.92 | 0.314 | 8.79 | -0.493 | -- | -1.31 | -- | 0.0406 | 0.11 | -- | 20.81 | 75 | -- | -- |
| 40.64 | 0.299 | 8.85 | -0.78 | 0.876 | -- | 0.218 | -- | -0.122 | 2.5 | -- | -- | -- | -- |
| 40.81 | 0.299 | 8.85 | -0.786 | 0.876 | -- | -- | -- | -0.123 | 2.51 | -- | -- | -- | -- |
| 44.5 | 0.311 | 8.79 | -0.488 | -- | -1.35 | -- | -- | 0.117 | -- | 20.55 | 20 | -- | -- |
| 40.23 | 0.295 | 8.8 | -- | 0.521 | -1.04 | -- | -- | 0.107 | 1.78 | 18.3 | 133 | -- | -- |
| 85.96 | 0.433 | 8.84 | -0.749 | -- | -- | -- | -- | -0.101 | -- | -- | -- | -- | -- |
| 57.09 | 0.353 | 8.83 | -- | 0.861 | -- | -- | -- | -0.0354 | 2.5 | -- | -- | -- | -- |
| 50.33 | 0.33 | 8.78 | -- | -- | -1.49 | -- | -- | 0.19 | -- | 19 | 21 | -- | -- |
| 100.75 | 0.469 | 8.82 | -- | -- | -- | -- | -- | -0.018 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 28.89 | temperature | 20 | 30 | > th | dose dependent | rect. | 23 | 21 |
| 3 | 29.05 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 12 |
| 6 | 29.35 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 12 |
| 31 | 29.95 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 20 |
| 101 | 30.55 | temperature | 20 | 720 | > th | dose dependent | sin | 9 | NA |
| 135 | 30.74 | temperature | 20 | 1440 | > th | dose dependent | rect. | 19 | 10 |
| 138 | 30.74 | temperature | 20 | 90 | > th | dose dependent | rect. | 12 | 23 |
| 143 | 30.76 | temperature | 20 | 1440 | > th | dose dependent | rect. | 19 | 8 |
| 172 | 30.82 | temperature | 20 | 30 | > th | dose dependent | rect. | 6 | 14 |
| 185 | 30.86 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 4 |
| 229 | 30.94 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 288 | 31.07 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 2 |
| 297 | 31.08 | temperature | 15 | 270 | > th | dose dependent | rect. | 4 | 13 |
| 315 | 31.12 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 12 |
| 316 | 31.12 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 3 |
| 364 | 31.20 | temperature | 20 | 30 | > th | dose dependent | rect. | 6 | 23 |
| 415 | 31.31 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 5 |
| 440 | 31.34 | temperature | 30 | 720 | < th | dose dependent | rect. | 18 | 18 |
| 452 | 31.37 | temperature | 25 | 1440 | > th | dose independent | rect. | 19 | 3 |
| 458 | 31.38 | temperature | 25 | 1440 | < th | dose independent | rect. | 19 | 5 |
| 461 | 31.38 | temperature | 20 | 90 | > th | dose dependent | no | NA | NA |
| 496 | 31.42 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 22 |
| 504 | 31.44 | temperature | 25 | 1440 | < th | dose independent | rect. | 18 | 7 |
| 509 | 31.45 | temperature | 30 | 720 | < th | dose dependent | sin | 9 | NA |
| 537 | 31.48 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 11 |
| 544 | 31.49 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 8 |
| 569 | 31.51 | temperature | 25 | 1440 | < th | dose independent | rect. | 20 | 2 |
| 579 | 31.51 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 20 |
| 592 | 31.52 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 681 | 31.59 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 2 |
| 753 | 31.65 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 20 |
| 846 | 31.71 | temperature | 20 | 90 | > th | dose dependent | rect. | 1 | 23 |
| 875 | 31.74 | temperature | 10 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 920 | 31.77 | temperature | 25 | 1440 | < th | dose independent | rect. | 17 | 14 |
| 951 | 31.78 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 18 |
| 961 | 31.79 | temperature | 25 | 1440 | > th | dose independent | rect. | 17 | 14 |