Os01g0857100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os01g0857100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 41.51 | 0.303 | 8.37 | 1.88 | 0.327 | -0.999 | 0.914 | 2.32 | 0.386 | 9.69 | 19.83 | 797 | -- | -- |
| 45.39 | 0.314 | 8.42 | 1.41 | 0.495 | -0.862 | 0.557 | -- | 0.277 | 8.97 | 16.91 | 2314 | -- | -- |
| 44.43 | 0.31 | 8.36 | 1.88 | 0.332 | -1.01 | -- | 2.1 | 0.401 | 9.2 | 19.75 | 835 | -- | -- |
| 45.67 | 0.315 | 8.42 | 1.57 | 0.573 | -0.924 | -- | -- | 0.263 | 9.22 | 14.3 | 4636 | -- | -- |
| 49 | 0.326 | 8.39 | 1.78 | -- | -1.17 | -- | 1.64 | 0.356 | -- | 20.24 | 760 | -- | -- |
| 60.75 | 0.365 | 8.46 | 1.1 | 0.588 | -- | 0.59 | -- | 0.0739 | 9.39 | -- | -- | -- | -- |
| 62.01 | 0.369 | 8.46 | 1.12 | 0.586 | -- | -- | -- | 0.0744 | 9.33 | -- | -- | -- | -- |
| 51.22 | 0.333 | 8.43 | 1.45 | -- | -1.18 | -- | -- | 0.288 | -- | 18.24 | 758 | -- | -- |
| 91.58 | 0.446 | 8.48 | -- | 0.531 | -0.561 | -- | -- | 0.0218 | 10.2 | -48.55 | 282 | -- | -- |
| 82.06 | 0.423 | 8.48 | 1.12 | -- | -- | -- | -- | 0.0767 | -- | -- | -- | -- | -- |
| 95.24 | 0.457 | 8.49 | -- | 0.586 | -- | -- | -- | -0.0507 | 9.19 | -- | -- | -- | -- |
| 100.06 | 0.466 | 8.48 | -- | -- | -0.718 | -- | -- | 0.0517 | -- | 22 | 721 | -- | -- |
| 115.15 | 0.501 | 8.51 | -- | -- | -- | -- | -- | -0.0476 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 40.68 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 21 |
| 5 | 40.87 | temperature | 20 | 720 | > th | dose dependent | rect. | 15 | 22 |
| 19 | 41.40 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 22 |
| 20 | 41.42 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 10 |
| 26 | 41.48 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 33 | 41.54 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 45 | 41.56 | temperature | 20 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 52 | 41.61 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 4 |
| 63 | 41.63 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 17 |
| 76 | 41.70 | temperature | 20 | 1440 | > th | dose dependent | sin | 13 | NA |
| 77 | 41.70 | temperature | 20 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 82 | 41.71 | temperature | 20 | 720 | > th | dose dependent | no | NA | NA |
| 90 | 41.74 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 136 | 41.90 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 11 |
| 162 | 41.95 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 22 |
| 172 | 41.99 | temperature | 20 | 4320 | > th | dose dependent | rect. | 13 | 7 |
| 203 | 42.05 | temperature | 30 | 270 | < th | dose dependent | rect. | 10 | 23 |
| 270 | 42.13 | temperature | 20 | 4320 | > th | dose dependent | sin | 19 | NA |
| 272 | 42.13 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 278 | 42.14 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 279 | 42.14 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 4 |
| 280 | 42.14 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 6 |
| 284 | 42.15 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 338 | 42.23 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 4 |
| 350 | 42.25 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 413 | 42.31 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 415 | 42.32 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 6 |
| 508 | 42.41 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 11 |
| 530 | 42.43 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 9 |
| 541 | 42.44 | temperature | 20 | 4320 | > th | dose dependent | rect. | 11 | 3 |
| 547 | 42.45 | temperature | 20 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 660 | 42.54 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 22 |
| 780 | 42.65 | humidity | 90 | 43200 | > th | dose independent | rect. | 13 | 2 |