Os01g0856600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Nsp1-like, C-terminal family protein.
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Os01g0856600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Nsp1-like, C-terminal family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 183.22 | 0.636 | 6.13 | 3.49 | 2.31 | -3.21 | -0.829 | 4.4 | 0.783 | 17.8 | 9.023 | 651 | -- | -- |
| 196.47 | 0.653 | 6.22 | 2.77 | 2.39 | -3.24 | -0.0407 | -- | 0.595 | 17.7 | 14.4 | 608 | -- | -- |
| 184.71 | 0.633 | 6.14 | 3.42 | 2.32 | -3.24 | -- | 3.94 | 0.764 | 17.8 | 9.11 | 647 | -- | -- |
| 196.3 | 0.653 | 6.22 | 2.73 | 2.4 | -3.19 | -- | -- | 0.579 | 17.7 | 14.2 | 595 | -- | -- |
| 310.72 | 0.821 | 6.07 | 3.66 | -- | -3 | -- | 4.02 | 0.812 | -- | -2.701 | 1231 | -- | -- |
| 317.13 | 0.835 | 6.31 | 1.96 | 1.71 | -- | -0.856 | -- | 0.101 | 16.8 | -- | -- | -- | -- |
| 319 | 0.836 | 6.31 | 1.96 | 1.71 | -- | -- | -- | 0.0961 | 16.9 | -- | -- | -- | -- |
| 324.66 | 0.839 | 6.17 | 2.8 | -- | -2.96 | -- | -- | 0.584 | -- | 8.272 | 1240 | -- | -- |
| 366.89 | 0.897 | 6.3 | -- | 2.2 | -2.23 | -- | -- | 0.145 | 16.2 | 11.3 | 416 | -- | -- |
| 473.2 | 1.02 | 6.29 | 1.89 | -- | -- | -- | -- | 0.052 | -- | -- | -- | -- | -- |
| 420.03 | 0.959 | 6.36 | -- | 1.68 | -- | -- | -- | -0.122 | 16.9 | -- | -- | -- | -- |
| 505.23 | 1.05 | 6.28 | -- | -- | -1.79 | -- | -- | 0.103 | -- | 7.955 | 1220 | -- | -- |
| 567.89 | 1.11 | 6.34 | -- | -- | -- | -- | -- | -0.158 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 176.87 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 22 |
| 7 | 180.60 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 11 | 181.43 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 23 |
| 16 | 181.86 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 23 |
| 25 | 182.66 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 41 | 183.64 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 53 | 184.52 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 11 |
| 54 | 184.52 | temperature | 15 | 720 | > th | dose dependent | rect. | 15 | 23 |
| 79 | 185.38 | temperature | 15 | 720 | > th | dose dependent | rect. | 6 | 23 |
| 117 | 186.12 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 23 |
| 135 | 186.42 | temperature | 15 | 1440 | > th | dose dependent | rect. | 11 | 5 |
| 193 | 187.14 | temperature | 20 | 1440 | > th | dose dependent | sin | 18 | NA |
| 201 | 187.26 | temperature | 30 | 720 | < th | dose dependent | rect. | 13 | 22 |
| 206 | 187.31 | temperature | 30 | 720 | < th | dose dependent | rect. | 11 | 23 |
| 218 | 187.48 | temperature | 10 | 1440 | > th | dose dependent | sin | 19 | NA |
| 270 | 187.93 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 23 |
| 291 | 188.06 | temperature | 30 | 90 | < th | dose dependent | rect. | 7 | 23 |
| 300 | 188.17 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 307 | 188.25 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 22 |
| 309 | 188.29 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 332 | 188.46 | temperature | 30 | 1440 | < th | dose dependent | rect. | 11 | 12 |
| 344 | 188.53 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 23 |
| 572 | 190.41 | temperature | 30 | 1440 | < th | dose dependent | sin | 18 | NA |
| 642 | 190.91 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 1 |