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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0855900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.37 (0.0365) R2 : 0.149
β1 : 1.18 (0.134) R2dD : 0.151 R2D : 0.126
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.241 (0.078) R2dN8 : 0.0238 R2N8 : -0.00166
σ : 0.686
deviance : 215.44
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
187.11 0.643 4.31 1.74 0.671 -0.858 0.944 1.95 0.486 15.4 20.06 376 -- --
188.91 0.64 4.35 1.4 0.624 -0.953 1.45 -- 0.405 15.7 14.8 435 -- --
189.28 0.641 4.29 1.9 0.678 -0.863 -- 2.71 0.525 15.2 20.05 349 -- --
194.19 0.649 4.35 1.41 0.607 -0.872 -- -- 0.385 15.3 14.79 445 -- --
200.8 0.66 4.32 1.6 -- -0.933 -- 0.695 0.438 -- 3.187 1080 -- --
199.66 0.662 4.37 1.18 0.459 -- 0.957 -- 0.247 14.5 -- -- -- --
202.52 0.666 4.37 1.2 0.462 -- -- -- 0.251 13.8 -- -- -- --
201.19 0.661 4.34 1.45 -- -0.89 -- -- 0.399 -- 15.5 1083 -- --
239.98 0.722 4.39 -- 0.47 -0.214 -- -- 0.144 14.2 -8.756 411 -- --
215.44 0.686 4.37 1.18 -- -- -- -- 0.241 -- -- -- -- --
240.54 0.725 4.4 -- 0.44 -- -- -- 0.117 13.8 -- -- -- --
249.29 0.738 4.41 -- -- 0.442 -- -- 0.0591 -- -8.756 411 -- --
252.31 0.741 4.4 -- -- -- -- -- 0.109 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 178.42 temperature 10.0 30 > th dose dependent rect. 12 21
2 178.48 radiation 1.0 90 < th dose independent rect. 8 3
3 178.48 radiation 1.0 90 < th dose dependent rect. 8 3
7 179.07 atmosphere 1015.0 270 < th dose dependent rect. 11 7
11 179.87 temperature 25.0 270 < th dose independent rect. 7 4
12 179.88 temperature 10.0 270 > th dose dependent rect. 11 7
16 180.10 temperature 30.0 270 < th dose dependent rect. 9 1
21 180.26 temperature 25.0 270 < th dose independent rect. 8 2
45 181.08 wind 5.0 270 < th dose independent rect. 22 9
47 181.11 temperature 10.0 270 > th dose dependent rect. 10 22
48 181.15 temperature 10.0 1440 > th dose independent rect. 10 3
51 181.15 atmosphere 995.0 1440 > th dose independent rect. 10 3
52 181.15 temperature 10.0 1440 > th dose independent rect. 13 21
57 181.20 wind 1.0 10 > th dose independent rect. 9 3
58 181.21 radiation 40.0 90 < th dose independent rect. 12 6
60 181.29 temperature 10.0 30 > th dose independent rect. 9 3
62 181.29 atmosphere 995.0 30 > th dose independent rect. 9 3
63 181.29 atmosphere 1015.0 30 < th dose independent rect. 9 3
64 181.29 precipitation 0.1 30 < th dose independent rect. 9 3
65 181.29 temperature 10.0 30 > th dose independent rect. 12 21
66 181.29 precipitation 0.1 30 < th dose dependent rect. 9 3
68 181.31 radiation 1.0 30 > th dose independent rect. 9 3
73 181.43 precipitation 0.1 10 < th dose independent rect. 12 21
75 181.43 precipitation 0.1 10 < th dose dependent rect. 12 21
77 181.45 atmosphere 1010.0 270 < th dose independent rect. 11 7
78 181.46 atmosphere 1010.0 10 < th dose dependent rect. 12 10
85 181.55 radiation 40.0 10 < th dose independent rect. 13 20
87 181.56 wind 9.0 30 < th dose independent rect. 12 21
98 181.62 temperature 20.0 270 > th dose independent rect. 11 7
107 181.71 wind 9.0 30 < th dose independent rect. 9 3
119 181.88 atmosphere 1015.0 30 < th dose independent rect. 12 21
124 181.92 wind 3.0 90 > th dose dependent rect. 4 3
131 181.99 temperature 30.0 30 < th dose dependent rect. 9 4
137 182.04 temperature 10.0 30 > th dose dependent rect. 15 18
150 182.24 precipitation 0.1 90 > th dose independent rect. 4 7
156 182.26 wind 9.0 30 < th dose dependent rect. 12 21
159 182.30 temperature 30.0 270 < th dose independent rect. 16 20
160 182.30 precipitation 0.1 90 > th dose dependent rect. 4 7
166 182.31 temperature 15.0 270 > th dose dependent rect. 3 15
205 182.53 precipitation 0.1 270 < th dose independent rect. 10 23
206 182.53 precipitation 0.1 270 < th dose dependent rect. 10 23
218 182.60 atmosphere 995.0 30 > th dose independent rect. 12 21
231 182.68 atmosphere 995.0 30 > th dose dependent rect. 9 3
255 182.82 temperature 10.0 270 > th dose independent rect. 9 1
256 182.82 atmosphere 995.0 270 > th dose independent rect. 9 1
257 182.82 atmosphere 1015.0 270 < th dose independent rect. 9 1
258 182.82 temperature 10.0 270 > th dose independent rect. 10 23
260 182.85 humidity 50.0 30 > th dose independent rect. 9 3
266 182.89 radiation 1.0 90 > th dose independent sin 14 NA
267 182.89 wind 9.0 270 < th dose independent rect. 9 1
274 182.93 precipitation 0.1 270 < th dose independent rect. 9 1
275 182.93 precipitation 0.1 270 < th dose dependent rect. 9 1
280 182.95 temperature 10.0 270 > th dose dependent rect. 13 3
297 183.04 humidity 50.0 270 > th dose independent rect. 9 1
302 183.06 radiation 40.0 10 < th dose independent rect. 13 6
310 183.10 humidity 90.0 270 < th dose independent rect. 11 7
333 183.14 temperature 30.0 270 < th dose dependent rect. 7 13
342 183.19 precipitation 0.1 270 < th dose independent rect. 12 6
345 183.19 precipitation 0.1 270 < th dose dependent rect. 12 6
353 183.26 temperature 20.0 270 > th dose independent rect. 13 3
360 183.29 wind 1.0 270 > th dose independent rect. 9 1
371 183.33 atmosphere 995.0 270 > th dose independent rect. 18 18
372 183.34 precipitation 0.1 10 > th dose independent rect. 5 3
390 183.34 temperature 10.0 270 > th dose dependent sin 22 NA
391 183.34 precipitation 0.1 10 > th dose dependent rect. 5 3
419 183.39 radiation 40.0 90 < th dose dependent rect. 12 6
423 183.40 temperature 30.0 270 < th dose dependent rect. 6 15
436 183.46 temperature 10.0 270 > th dose independent rect. 18 18
439 183.47 atmosphere 995.0 90 > th dose dependent rect. 9 14
463 183.54 radiation 1.0 270 > th dose independent rect. 11 20
468 183.56 wind 9.0 270 < th dose independent rect. 10 23
474 183.59 humidity 80.0 10 < th dose independent rect. 9 3
475 183.60 atmosphere 1010.0 30 < th dose independent rect. 12 7
487 183.63 wind 9.0 270 < th dose independent rect. 12 6
500 183.64 radiation 1.0 30 > th dose independent rect. 12 21
503 183.65 wind 1.0 10 > th dose independent rect. 9 6
508 183.67 wind 3.0 30 > th dose independent rect. 5 2
525 183.70 humidity 50.0 270 > th dose independent rect. 16 20
546 183.74 atmosphere 1015.0 30 < th dose dependent rect. 12 21
548 183.75 wind 9.0 270 < th dose independent rect. 18 18
567 183.80 wind 1.0 270 > th dose independent rect. 12 6
577 183.81 radiation 1.0 30 > th dose independent rect. 9 6
581 183.82 precipitation 0.1 270 < th dose independent rect. 18 18
584 183.82 precipitation 0.1 270 < th dose dependent rect. 18 18
616 183.87 precipitation 0.1 30 < th dose independent rect. 12 7
618 183.87 humidity 50.0 270 > th dose independent rect. 18 17
621 183.87 precipitation 0.1 30 < th dose dependent rect. 12 7
634 183.90 atmosphere 995.0 270 > th dose dependent rect. 9 1
651 183.97 temperature 30.0 270 < th dose independent rect. 7 14
652 183.97 precipitation 0.1 30 < th dose independent rect. 19 17
656 183.97 precipitation 0.1 30 < th dose dependent rect. 19 17
688 184.08 wind 9.0 30 < th dose independent rect. 12 7
697 184.09 temperature 10.0 1440 > th dose independent rect. 13 6
701 184.09 temperature 10.0 1440 > th dose independent rect. 19 18
704 184.09 atmosphere 995.0 1440 > th dose independent rect. 19 18
721 184.15 temperature 20.0 10 > th dose independent rect. 12 10
722 184.15 atmosphere 995.0 30 > th dose dependent rect. 9 6
735 184.19 wind 5.0 90 < th dose independent rect. 1 8
739 184.20 radiation 1.0 270 > th dose independent rect. 12 18
751 184.24 atmosphere 1015.0 30 < th dose dependent rect. 15 4
753 184.25 atmosphere 1005.0 30 > th dose dependent rect. 9 14
761 184.28 precipitation 0.1 270 < th dose independent rect. 21 10
765 184.28 precipitation 0.1 270 < th dose dependent rect. 21 10
771 184.30 temperature 10.0 1440 > th dose independent rect. 10 6
774 184.30 temperature 10.0 1440 > th dose independent rect. 16 18
796 184.34 wind 9.0 30 < th dose dependent rect. 15 18
810 184.38 precipitation 0.1 30 < th dose independent rect. 9 6
813 184.38 precipitation 0.1 30 < th dose dependent rect. 9 6
815 184.39 temperature 10.0 30 > th dose independent rect. 9 6
817 184.39 atmosphere 995.0 30 > th dose independent rect. 9 6
818 184.39 atmosphere 1015.0 30 < th dose independent rect. 9 6
819 184.39 temperature 10.0 30 > th dose independent rect. 15 18
828 184.41 precipitation 0.1 10 < th dose independent rect. 15 18
829 184.41 precipitation 0.1 10 < th dose dependent rect. 15 18
832 184.42 wind 9.0 30 < th dose independent rect. 19 17
834 184.43 atmosphere 995.0 270 > th dose independent rect. 12 5
854 184.49 radiation 20.0 270 < th dose independent rect. 21 10
855 184.49 atmosphere 995.0 270 > th dose independent rect. 16 21
858 184.50 wind 9.0 270 < th dose dependent rect. 9 1
863 184.51 humidity 50.0 270 > th dose independent rect. 7 14
872 184.53 radiation 1.0 270 > th dose independent rect. 9 1
874 184.53 wind 1.0 30 > th dose independent rect. 12 7
902 184.58 wind 9.0 30 < th dose independent rect. 15 18
940 184.61 wind 9.0 90 < th dose dependent rect. 23 10
948 184.62 temperature 25.0 720 < th dose dependent rect. 1 10
957 184.65 temperature 10.0 270 > th dose independent rect. 21 10
958 184.65 temperature 30.0 270 < th dose independent rect. 21 10
959 184.65 humidity 50.0 270 > th dose independent rect. 21 10
961 184.65 atmosphere 995.0 270 > th dose independent rect. 21 10
962 184.65 radiation 40.0 270 < th dose independent rect. 21 10
963 184.65 temperature 10.0 270 > th dose independent rect. 7 14
968 184.66 temperature 10.0 270 > th dose independent rect. 13 3
970 184.66 atmosphere 1010.0 270 < th dose independent rect. 13 3
974 184.66 temperature 10.0 270 > th dose independent rect. 16 21
984 184.67 temperature 25.0 720 < th dose dependent rect. 24 13
986 184.68 precipitation 0.1 270 < th dose independent rect. 13 3
988 184.68 precipitation 0.1 270 < th dose dependent rect. 13 3
999 184.71 temperature 25.0 720 < th dose dependent sin 6 NA