Os01g0854400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0854400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 210.59 | 0.682 | 4.03 | -3.17 | 0.11 | 1.61 | -1.49 | -2.35 | -0.919 | 11.5 | 78.66 | 1267 | -- | -- |
| 216.72 | 0.686 | 3.99 | -3 | 0.174 | 1.46 | -1.22 | -- | -0.88 | 10.9 | 77.39 | 1227 | -- | -- |
| 218.19 | 0.688 | 4.02 | -3.19 | 0.189 | 1.58 | -- | -1.87 | -0.915 | 7.6 | 77.99 | 1289 | -- | -- |
| 221.91 | 0.694 | 3.99 | -3.05 | 0.239 | 1.46 | -- | -- | -0.883 | 8.35 | 77 | 1224 | -- | -- |
| 220.01 | 0.691 | 4.03 | -3.2 | -- | 1.58 | -- | -1.99 | -0.916 | -- | 78.26 | 1307 | -- | -- |
| 262.3 | 0.759 | 4.01 | -2.73 | 0.186 | -- | 1.5 | -- | -0.95 | 1.4 | -- | -- | -- | -- |
| 269.28 | 0.768 | 4.01 | -2.79 | 0.284 | -- | -- | -- | -0.962 | 4.45 | -- | -- | -- | -- |
| 224.58 | 0.698 | 3.99 | -3.04 | -- | 1.41 | -- | -- | -0.882 | -- | 77.16 | 1273 | -- | -- |
| 446.3 | 0.984 | 3.94 | -- | 0.208 | 1.21 | -- | -- | -0.683 | 8.75 | 145.4 | 1224 | -- | -- |
| 273.59 | 0.773 | 4.01 | -2.77 | -- | -- | -- | -- | -0.954 | -- | -- | -- | -- | -- |
| 473.79 | 1.02 | 3.94 | -- | 0.232 | -- | -- | -- | -0.651 | 4.73 | -- | -- | -- | -- |
| 447.8 | 0.986 | 3.96 | -- | -- | 1.19 | -- | -- | -0.69 | -- | 94 | 1309 | -- | -- |
| 476.65 | 1.02 | 3.94 | -- | -- | -- | -- | -- | -0.646 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 208.05 | temperature | 25 | 720 | > th | dose dependent | rect. | 16 | 8 |
| 4 | 208.28 | humidity | 50 | 720 | > th | dose dependent | rect. | 16 | 8 |
| 31 | 210.42 | temperature | 25 | 720 | > th | dose dependent | sin | 13 | NA |
| 35 | 210.80 | humidity | 90 | 720 | < th | dose dependent | rect. | 17 | 5 |
| 49 | 211.64 | humidity | 70 | 720 | > th | dose independent | rect. | 16 | 8 |
| 78 | 213.53 | humidity | 70 | 1440 | > th | dose independent | rect. | 18 | 21 |
| 80 | 213.58 | humidity | 70 | 720 | < th | dose independent | rect. | 18 | 14 |
| 88 | 213.91 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 9 |
| 94 | 214.14 | humidity | 50 | 720 | > th | dose dependent | rect. | 12 | 12 |
| 95 | 214.17 | humidity | 80 | 1440 | < th | dose dependent | rect. | 6 | 11 |
| 96 | 214.18 | humidity | 70 | 720 | < th | dose independent | sin | 12 | NA |
| 105 | 214.33 | humidity | 80 | 1440 | < th | dose dependent | rect. | 20 | 21 |
| 106 | 214.36 | radiation | 1 | 720 | > th | dose independent | rect. | 17 | 13 |
| 140 | 215.01 | humidity | 70 | 720 | < th | dose independent | rect. | 15 | 17 |
| 151 | 215.15 | humidity | 90 | 1440 | < th | dose dependent | rect. | 12 | 2 |
| 158 | 215.27 | humidity | 80 | 1440 | < th | dose dependent | sin | 2 | NA |
| 166 | 215.36 | humidity | 50 | 1440 | > th | dose dependent | rect. | 12 | 2 |
| 182 | 215.55 | temperature | 30 | 720 | < th | dose independent | rect. | 16 | 8 |
| 222 | 215.99 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 9 |
| 231 | 216.10 | humidity | 80 | 1440 | < th | dose dependent | rect. | 6 | 16 |
| 247 | 216.18 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 6 |
| 251 | 216.21 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 4 |
| 265 | 216.28 | humidity | 80 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 268 | 216.30 | humidity | 50 | 1440 | > th | dose dependent | rect. | 11 | 4 |
| 324 | 216.56 | humidity | 50 | 1440 | > th | dose dependent | rect. | 11 | 6 |
| 343 | 216.64 | humidity | 80 | 1440 | < th | dose independent | sin | 3 | NA |
| 355 | 216.68 | humidity | 90 | 720 | < th | dose dependent | rect. | 16 | 16 |
| 358 | 216.69 | humidity | 80 | 1440 | < th | dose dependent | no | NA | NA |
| 364 | 216.72 | humidity | 70 | 720 | < th | dose independent | rect. | 17 | 3 |
| 384 | 216.80 | humidity | 80 | 1440 | < th | dose dependent | rect. | 16 | 23 |
| 391 | 216.85 | humidity | 70 | 720 | > th | dose dependent | rect. | 19 | 2 |
| 399 | 216.91 | humidity | 80 | 1440 | > th | dose independent | rect. | 2 | 13 |
| 404 | 216.93 | humidity | 70 | 720 | > th | dose independent | rect. | 16 | 16 |
| 416 | 216.98 | humidity | 70 | 1440 | < th | dose independent | rect. | 18 | 21 |
| 512 | 217.46 | humidity | 70 | 720 | < th | dose independent | rect. | 15 | 5 |
| 564 | 217.64 | humidity | 70 | 1440 | > th | dose independent | rect. | 23 | 16 |
| 566 | 217.65 | humidity | 70 | 1440 | > th | dose independent | rect. | 21 | 18 |
| 595 | 217.72 | humidity | 50 | 1440 | > th | dose dependent | rect. | 6 | 11 |
| 612 | 217.75 | humidity | 50 | 1440 | > th | dose dependent | sin | 23 | NA |
| 645 | 217.87 | humidity | 80 | 1440 | > th | dose independent | sin | 3 | NA |
| 661 | 217.95 | humidity | 70 | 720 | > th | dose independent | sin | 12 | NA |
| 761 | 218.44 | humidity | 50 | 1440 | > th | dose dependent | rect. | 6 | 16 |
| 796 | 218.57 | humidity | 90 | 720 | < th | dose dependent | sin | 14 | NA |
| 817 | 218.67 | humidity | 60 | 1440 | > th | dose independent | rect. | 14 | 5 |
| 827 | 218.71 | humidity | 60 | 1440 | > th | dose independent | rect. | 15 | 2 |
| 874 | 218.87 | humidity | 50 | 720 | > th | dose dependent | sin | 17 | NA |
| 932 | 219.12 | humidity | 60 | 1440 | > th | dose independent | rect. | 14 | 19 |
| 948 | 219.17 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 6 |
| 959 | 219.20 | humidity | 60 | 1440 | > th | dose independent | rect. | 14 | 15 |