Os01g0854000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0854000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 354.73 | 0.885 | 13.9 | -23.5 | 1.16 | 22.2 | -1.24 | -240 | 0.343 | 9.83 | 30.09 | 768 | 17.9 | 0.865 |
| 817.53 | 1.34 | 11.3 | -0.258 | 1.51 | -2.17 | 1.21 | -- | 0.737 | 13.5 | 30.09 | 768 | 17.9 | 0.865 |
| 360 | 0.884 | 13.9 | -23.5 | 1.16 | 22 | -- | -239 | 0.346 | 10.2 | 30.1 | 768 | 17.9 | 10.3 |
| 354.02 | 0.876 | 11.4 | 0.293 | 1.02 | -4.16 | -- | -- | 0.307 | 9.21 | 26.63 | 651 | 18.7 | 3.88 |
| 440.75 | 0.978 | 13.9 | -23.5 | -- | 22 | -- | -239 | 0.334 | -- | 30.1 | 775 | 17.9 | 11.3 |
| 832.94 | 1.35 | 11.3 | -0.283 | 1.49 | -- | 0.96 | -- | 0.76 | 13.2 | -- | -- | -- | -- |
| 836.04 | 1.35 | 11.3 | -0.252 | 1.49 | -- | -- | -- | 0.764 | 12.9 | -- | -- | -- | -- |
| 376.48 | 0.904 | 11.4 | 0.452 | -- | -4.2 | -- | -- | 0.406 | -- | 26.37 | 729 | 17.2 | 5.48 |
| 355.56 | 0.878 | 11.4 | -- | 0.946 | -4.17 | -- | -- | 0.278 | 9.27 | 26.6 | 665 | 18.4 | 4.2 |
| 974.54 | 1.46 | 11.3 | -0.307 | -- | -- | -- | -- | 0.736 | -- | -- | -- | -- | -- |
| 837.71 | 1.35 | 11.3 | -- | 1.49 | -- | -- | -- | 0.792 | 12.9 | -- | -- | -- | -- |
| 380.16 | 0.908 | 11.4 | -- | -- | -4.17 | -- | -- | 0.333 | -- | 26.41 | 732 | 17.1 | 5.65 |
| 977.03 | 1.46 | 11.3 | -- | -- | -- | -- | -- | 0.77 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 357.00 | temperature | 30 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 37 | 387.45 | temperature | 30 | 720 | > th | dose independent | rect. | 18 | 1 |
| 55 | 394.24 | humidity | 70 | 720 | < th | dose independent | rect. | 19 | 12 |
| 56 | 394.44 | humidity | 70 | 720 | < th | dose independent | rect. | 19 | 1 |
| 70 | 401.15 | humidity | 70 | 720 | < th | dose dependent | rect. | 19 | 12 |
| 71 | 401.27 | humidity | 70 | 720 | < th | dose dependent | rect. | 19 | 1 |
| 143 | 419.90 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 16 |
| 146 | 421.32 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 8 |
| 170 | 428.71 | humidity | 50 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 175 | 431.16 | humidity | 50 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 178 | 432.68 | humidity | 70 | 720 | > th | dose independent | rect. | 18 | 8 |
| 250 | 441.52 | radiation | 1 | 720 | > th | dose independent | rect. | 18 | 1 |
| 299 | 446.61 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 5 |
| 300 | 447.54 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 3 |
| 312 | 450.45 | humidity | 50 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 317 | 451.82 | wind | 3 | 90 | < th | dose dependent | rect. | 3 | 2 |
| 318 | 452.11 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 12 |
| 322 | 453.92 | wind | 3 | 10 | < th | dose dependent | rect. | 3 | 3 |
| 323 | 454.30 | humidity | 90 | 90 | > th | dose dependent | rect. | 3 | 2 |
| 363 | 459.80 | temperature | 30 | 1440 | > th | dose dependent | sin | 11 | NA |
| 451 | 468.36 | radiation | 1 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 533 | 473.65 | humidity | 70 | 720 | > th | dose independent | rect. | 18 | 15 |
| 551 | 474.05 | temperature | 25 | 90 | < th | dose independent | rect. | 3 | 2 |
| 568 | 476.03 | temperature | 30 | 1440 | > th | dose independent | sin | 12 | NA |
| 585 | 476.29 | temperature | 30 | 1440 | < th | dose independent | sin | 11 | NA |
| 588 | 476.51 | humidity | 70 | 720 | > th | dose independent | sin | 11 | NA |
| 692 | 478.28 | temperature | 30 | 1440 | > th | dose dependent | no | NA | NA |
| 796 | 479.36 | temperature | 30 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 850 | 481.27 | humidity | 90 | 90 | > th | dose independent | rect. | 3 | 2 |
| 859 | 481.91 | temperature | 20 | 90 | > th | dose dependent | rect. | 3 | 2 |
| 926 | 484.46 | temperature | 20 | 90 | > th | dose independent | rect. | 3 | 2 |
| 943 | 484.73 | temperature | 15 | 270 | > th | dose dependent | rect. | 1 | 4 |
| 993 | 486.47 | temperature | 30 | 1440 | < th | dose independent | rect. | 17 | 22 |