Os01g0853600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0853600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 197.66 | 0.661 | 4.32 | -0.318 | 0.443 | 0.756 | -0.512 | -0.97 | -0.318 | 7.02 | 20.01 | 1430 | -- | -- |
| 199.94 | 0.659 | 4.32 | -0.198 | 0.439 | 0.753 | -0.542 | -- | -0.309 | 6.96 | 20.02 | 1431 | -- | -- |
| 198.32 | 0.656 | 4.31 | -0.328 | 0.442 | 0.758 | -- | -0.973 | -0.318 | 7.12 | 20.01 | 1425 | -- | -- |
| 200.27 | 0.659 | 4.29 | -0.146 | 0.427 | 0.714 | -- | -- | -0.265 | 7.29 | 20.31 | 1416 | -- | -- |
| 208.59 | 0.673 | 4.32 | -0.302 | -- | 0.754 | -- | -0.918 | -0.303 | -- | 20.13 | 1432 | -- | -- |
| 219.21 | 0.694 | 4.24 | 0.0825 | 0.448 | -- | -0.506 | -- | -0.0281 | 6.59 | -- | -- | -- | -- |
| 219.85 | 0.694 | 4.24 | 0.0749 | 0.446 | -- | -- | -- | -0.0266 | 6.56 | -- | -- | -- | -- |
| 210.33 | 0.675 | 4.3 | -0.137 | -- | 0.71 | -- | -- | -0.236 | -- | 20.15 | 1435 | -- | -- |
| 200.3 | 0.659 | 4.29 | -- | 0.444 | 0.727 | -- | -- | -0.23 | 7.15 | 14.3 | 1433 | -- | -- |
| 230.2 | 0.709 | 4.25 | 0.0858 | -- | -- | -- | -- | -0.0175 | -- | -- | -- | -- | -- |
| 220 | 0.694 | 4.24 | -- | 0.447 | -- | -- | -- | -0.035 | 6.56 | -- | -- | -- | -- |
| 210.52 | 0.676 | 4.3 | -- | -- | 0.745 | -- | -- | -0.239 | -- | 13.17 | 1445 | -- | -- |
| 230.4 | 0.708 | 4.25 | -- | -- | -- | -- | -- | -0.027 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 194.80 | radiation | 20 | 1440 | > th | dose dependent | rect. | 15 | 17 |
| 2 | 195.03 | radiation | 20 | 1440 | > th | dose independent | rect. | 15 | 18 |
| 3 | 195.18 | radiation | 20 | 1440 | > th | dose independent | sin | 12 | NA |
| 4 | 195.28 | radiation | 30 | 1440 | < th | dose independent | rect. | 15 | 17 |
| 5 | 195.29 | radiation | 20 | 1440 | > th | dose independent | rect. | 12 | 22 |
| 14 | 195.72 | radiation | 40 | 10 | < th | dose dependent | sin | 10 | NA |
| 19 | 196.45 | radiation | 20 | 1440 | > th | dose dependent | rect. | 15 | 2 |
| 39 | 196.64 | radiation | 20 | 1440 | < th | dose independent | rect. | 15 | 2 |
| 44 | 196.77 | radiation | 20 | 1440 | < th | dose independent | rect. | 15 | 4 |
| 52 | 196.82 | radiation | 40 | 1440 | < th | dose dependent | rect. | 15 | 2 |
| 53 | 196.85 | radiation | 20 | 1440 | > th | dose independent | rect. | 15 | 2 |
| 69 | 196.86 | radiation | 20 | 1440 | < th | dose independent | sin | 13 | NA |
| 75 | 196.90 | radiation | 1 | 10 | > th | dose dependent | sin | 10 | NA |
| 79 | 196.92 | radiation | 40 | 1440 | < th | dose dependent | rect. | 15 | 15 |
| 95 | 197.03 | radiation | 30 | 1440 | < th | dose dependent | rect. | 12 | 21 |
| 96 | 197.04 | radiation | 10 | 1440 | > th | dose dependent | sin | 12 | NA |
| 100 | 197.08 | temperature | 20 | 90 | > th | dose dependent | rect. | 3 | 6 |
| 120 | 197.18 | radiation | 40 | 1440 | < th | dose dependent | rect. | 15 | 17 |
| 121 | 197.19 | radiation | 30 | 1440 | < th | dose dependent | sin | 13 | NA |
| 129 | 197.24 | radiation | 20 | 1440 | < th | dose independent | rect. | 12 | 21 |
| 130 | 197.27 | radiation | 20 | 1440 | < th | dose independent | rect. | 13 | 19 |
| 143 | 197.34 | temperature | 30 | 4320 | > th | dose dependent | rect. | 16 | 3 |
| 160 | 197.37 | radiation | 40 | 1440 | < th | dose dependent | rect. | 15 | 10 |
| 161 | 197.37 | temperature | 25 | 720 | > th | dose dependent | rect. | 18 | 14 |
| 172 | 197.46 | radiation | 20 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 229 | 197.81 | radiation | 20 | 1440 | > th | dose independent | no | NA | NA |
| 230 | 197.81 | radiation | 20 | 1440 | > th | dose independent | rect. | 6 | 11 |
| 349 | 197.87 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 486 | 198.38 | temperature | 30 | 4320 | > th | dose dependent | sin | 12 | NA |
| 647 | 198.64 | radiation | 30 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 680 | 198.71 | radiation | 30 | 1440 | < th | dose dependent | rect. | 2 | 16 |
| 683 | 198.71 | radiation | 30 | 1440 | < th | dose dependent | rect. | 7 | 23 |
| 701 | 198.72 | radiation | 30 | 1440 | < th | dose dependent | rect. | 5 | 13 |
| 710 | 198.74 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 2 |
| 724 | 198.74 | radiation | 30 | 1440 | < th | dose dependent | rect. | 7 | 11 |
| 841 | 198.77 | radiation | 30 | 1440 | < th | dose dependent | no | NA | NA |
| 853 | 198.77 | radiation | 30 | 1440 | < th | dose dependent | rect. | 5 | 23 |
| 862 | 198.78 | radiation | 30 | 1440 | < th | dose dependent | rect. | 7 | 21 |