Os01g0852900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os01g0852900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 86.22 | 0.436 | 5.76 | 1.61 | 1.23 | -1.47 | -0.743 | 1.51 | -0.168 | 17.3 | 24.31 | 4295 | -- | -- |
| 86.83 | 0.434 | 5.76 | 1.44 | 1.19 | -1.38 | -0.894 | -- | -0.0775 | 17.2 | 21.54 | 4322 | -- | -- |
| 87.31 | 0.435 | 5.75 | 1.56 | 1.22 | -1.42 | -- | 1.02 | -0.0926 | 17.3 | 22.85 | 4280 | -- | -- |
| 87.66 | 0.436 | 5.78 | 1.31 | 1.22 | -1.34 | -- | -- | -0.128 | 17.3 | 22.15 | 4295 | -- | -- |
| 163.78 | 0.596 | 5.73 | 1.55 | -- | -1.53 | -- | 0.929 | -0.0878 | -- | 22.68 | 4158 | -- | -- |
| 140.52 | 0.556 | 5.83 | 0.76 | 1.29 | -- | -0.657 | -- | -0.359 | 17.1 | -- | -- | -- | -- |
| 141.62 | 0.557 | 5.83 | 0.76 | 1.29 | -- | -- | -- | -0.362 | 17.1 | -- | -- | -- | -- |
| 164 | 0.596 | 5.77 | 1.28 | -- | -1.46 | -- | -- | -0.165 | -- | 22.54 | 4172 | -- | -- |
| 124.92 | 0.521 | 5.82 | -- | 1.22 | -1.13 | -- | -- | -0.343 | 17.4 | 25.3 | 4334 | -- | -- |
| 228.93 | 0.707 | 5.82 | 0.714 | -- | -- | -- | -- | -0.395 | -- | -- | -- | -- | -- |
| 156.83 | 0.586 | 5.85 | -- | 1.28 | -- | -- | -- | -0.447 | 17.1 | -- | -- | -- | -- |
| 201.39 | 0.661 | 5.82 | -- | -- | -1.11 | -- | -- | -0.415 | -- | 23.94 | 4161 | -- | -- |
| 242.36 | 0.727 | 5.84 | -- | -- | -- | -- | -- | -0.474 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 85.40 | temperature | 25 | 4320 | > th | dose dependent | rect. | 7 | 5 |
| 4 | 85.72 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 10 |
| 7 | 85.76 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 13 |
| 8 | 85.77 | temperature | 25 | 4320 | > th | dose dependent | sin | 3 | NA |
| 66 | 86.01 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 21 |
| 143 | 86.28 | temperature | 20 | 4320 | > th | dose dependent | rect. | 17 | 2 |
| 154 | 86.30 | temperature | 25 | 4320 | > th | dose dependent | rect. | 13 | 23 |
| 180 | 86.37 | temperature | 25 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 210 | 86.45 | temperature | 25 | 4320 | > th | dose dependent | no | NA | NA |
| 227 | 86.48 | temperature | 25 | 4320 | > th | dose dependent | rect. | 11 | 23 |
| 232 | 86.50 | temperature | 10 | 1440 | > th | dose dependent | rect. | 4 | 10 |
| 332 | 86.71 | temperature | 10 | 1440 | > th | dose dependent | sin | 3 | NA |
| 336 | 86.71 | temperature | 10 | 1440 | > th | dose dependent | rect. | 6 | 20 |
| 363 | 86.75 | temperature | 30 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 389 | 86.78 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 22 |
| 400 | 86.80 | temperature | 10 | 1440 | > th | dose dependent | rect. | 3 | 19 |
| 499 | 86.89 | temperature | 25 | 4320 | > th | dose dependent | rect. | 13 | 8 |
| 558 | 86.94 | temperature | 30 | 1440 | < th | dose dependent | rect. | 6 | 16 |
| 563 | 86.94 | temperature | 30 | 1440 | < th | dose dependent | rect. | 6 | 18 |
| 604 | 86.98 | temperature | 15 | 4320 | > th | dose dependent | rect. | 7 | 2 |
| 661 | 87.03 | temperature | 30 | 4320 | < th | dose dependent | rect. | 7 | 2 |
| 690 | 87.06 | temperature | 10 | 1440 | > th | dose dependent | no | NA | NA |
| 692 | 87.06 | temperature | 25 | 4320 | > th | dose dependent | rect. | 15 | 1 |
| 693 | 87.06 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 702 | 87.07 | temperature | 10 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 711 | 87.07 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 904 | 87.25 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 2 |