Os01g0852100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase domain containing protein.
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Os01g0852100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 190.89 | 0.649 | 6.57 | -2.58 | 1.57 | 1.83 | -1.07 | 0.622 | 0.1 | 3.23 | 20.7 | 874 | -- | -- |
| 191.92 | 0.645 | 6.59 | -2.7 | 1.56 | 1.77 | -0.958 | -- | 0.072 | 3.21 | 20.67 | 886 | -- | -- |
| 194.39 | 0.649 | 6.58 | -2.61 | 1.55 | 1.83 | -- | 0.395 | 0.0917 | 3.14 | 20.68 | 886 | -- | -- |
| 194.82 | 0.65 | 6.59 | -2.69 | 1.55 | 1.79 | -- | -- | 0.0753 | 3.12 | 20.62 | 887 | -- | -- |
| 327.34 | 0.843 | 6.58 | -2.7 | -- | 2.21 | -- | 0.468 | 0.0805 | -- | 20.4 | 948 | -- | -- |
| 280.78 | 0.786 | 6.51 | -2.03 | 1.7 | -- | -1.1 | -- | 0.481 | 2.7 | -- | -- | -- | -- |
| 284.92 | 0.79 | 6.5 | -2 | 1.69 | -- | -- | -- | 0.488 | 2.59 | -- | -- | -- | -- |
| 327.63 | 0.843 | 6.6 | -2.78 | -- | 2.16 | -- | -- | 0.0624 | -- | 20.36 | 948 | -- | -- |
| 371.08 | 0.897 | 6.55 | -- | 1.67 | 1.41 | -- | -- | 0.425 | 2.81 | 20.2 | 793 | -- | -- |
| 452.18 | 0.994 | 6.49 | -1.93 | -- | -- | -- | -- | 0.53 | -- | -- | -- | -- | -- |
| 390.82 | 0.925 | 6.45 | -- | 1.65 | -- | -- | -- | 0.711 | 2.57 | -- | -- | -- | -- |
| 502.17 | 1.04 | 6.5 | -- | -- | 1.2 | -- | -- | 0.517 | -- | 20.61 | 887 | -- | -- |
| 550.71 | 1.1 | 6.44 | -- | -- | -- | -- | -- | 0.745 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 185.86 | temperature | 20 | 720 | > th | dose independent | rect. | 18 | 14 |
| 3 | 186.56 | temperature | 20 | 720 | > th | dose independent | rect. | 20 | 11 |
| 13 | 189.18 | temperature | 20 | 720 | < th | dose independent | rect. | 17 | 14 |
| 17 | 189.64 | temperature | 20 | 720 | > th | dose independent | sin | 10 | NA |
| 21 | 189.90 | temperature | 20 | 720 | > th | dose independent | rect. | 11 | 20 |
| 49 | 191.31 | temperature | 20 | 720 | < th | dose independent | sin | 10 | NA |
| 131 | 194.69 | temperature | 20 | 720 | > th | dose independent | rect. | 18 | 23 |
| 132 | 194.70 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 5 |
| 154 | 195.17 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 23 |
| 204 | 196.10 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 23 |
| 207 | 196.15 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 220 | 196.29 | temperature | 20 | 720 | < th | dose independent | rect. | 21 | 22 |
| 248 | 196.72 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 2 |
| 254 | 196.78 | temperature | 20 | 720 | < th | dose independent | no | NA | NA |
| 274 | 197.22 | temperature | 20 | 720 | < th | dose independent | rect. | 2 | 23 |
| 277 | 197.26 | temperature | 20 | 720 | > th | dose independent | rect. | 14 | 23 |
| 301 | 197.80 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 6 |
| 322 | 198.35 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 2 |
| 400 | 200.02 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 1 |
| 403 | 200.06 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 1 |
| 526 | 202.92 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 2 |
| 551 | 203.56 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 878 | 210.20 | temperature | 25 | 720 | < th | dose dependent | rect. | 22 | 11 |
| 921 | 210.90 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 8 |
| 959 | 211.63 | temperature | 25 | 720 | < th | dose dependent | sin | 8 | NA |