Os01g0850800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cupredoxin domain containing protein.
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Os01g0850800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cupredoxin domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36.37 | 0.283 | 3.23 | 0.111 | 0.195 | -0.177 | 0.1 | -1.26 | -0.0547 | 8.08 | 70.13 | 5008 | -- | -- |
| 38.48 | 0.289 | 3.24 | 0.0955 | 0.179 | -0.196 | -0.0683 | -- | -0.0957 | 8.02 | 74 | 8264 | -- | -- |
| 36.4 | 0.281 | 3.23 | 0.112 | 0.196 | -0.18 | -- | -1.23 | -0.0553 | 8.05 | 70.05 | 5008 | -- | -- |
| 38.49 | 0.289 | 3.24 | 0.0954 | 0.179 | -0.196 | -- | -- | -0.0962 | 8.01 | 73.96 | 8264 | -- | -- |
| 38.1 | 0.287 | 3.24 | 0.122 | -- | -0.153 | -- | -1.23 | -0.0564 | -- | 70.9 | 5797 | -- | -- |
| 39.58 | 0.295 | 3.23 | 0.0391 | 0.172 | -- | -0.0493 | -- | -0.0485 | 7.96 | -- | -- | -- | -- |
| 39.58 | 0.295 | 3.23 | 0.0378 | 0.172 | -- | -- | -- | -0.0485 | 7.99 | -- | -- | -- | -- |
| 40.09 | 0.295 | 3.25 | 0.0882 | -- | -0.244 | -- | -- | -0.125 | -- | 75 | 8576 | -- | -- |
| 38.56 | 0.289 | 3.24 | -- | 0.177 | -0.195 | -- | -- | -0.103 | 8.19 | 73 | 8264 | -- | -- |
| 41.2 | 0.3 | 3.23 | 0.0395 | -- | -- | -- | -- | -0.0462 | -- | -- | -- | -- | -- |
| 39.62 | 0.294 | 3.23 | -- | 0.172 | -- | -- | -- | -0.0527 | 7.97 | -- | -- | -- | -- |
| 40.21 | 0.295 | 3.25 | -- | -- | -0.228 | -- | -- | -0.127 | -- | 73.32 | 8565 | -- | -- |
| 41.24 | 0.3 | 3.23 | -- | -- | -- | -- | -- | -0.0506 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 36.10 | humidity | 80 | 14400 | < th | dose dependent | rect. | 23 | 11 |
| 6 | 36.16 | humidity | 70 | 14400 | > th | dose independent | rect. | 8 | 2 |
| 7 | 36.18 | humidity | 70 | 14400 | < th | dose independent | rect. | 8 | 2 |
| 8 | 36.18 | humidity | 70 | 14400 | > th | dose independent | rect. | 4 | 6 |
| 9 | 36.19 | humidity | 70 | 14400 | > th | dose independent | rect. | 6 | 4 |
| 20 | 36.22 | humidity | 70 | 14400 | < th | dose independent | rect. | 6 | 4 |
| 29 | 36.23 | wind | 3 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 33 | 36.25 | atmosphere | 995 | 720 | > th | dose independent | rect. | 23 | 16 |
| 38 | 36.28 | humidity | 70 | 4320 | > th | dose independent | rect. | 10 | 1 |
| 41 | 36.29 | humidity | 50 | 4320 | > th | dose dependent | rect. | 12 | 1 |
| 51 | 36.35 | humidity | 70 | 4320 | < th | dose independent | rect. | 10 | 1 |
| 55 | 36.38 | humidity | 80 | 4320 | < th | dose dependent | rect. | 12 | 1 |
| 58 | 36.40 | humidity | 70 | 4320 | > th | dose independent | rect. | 9 | 4 |
| 59 | 36.40 | humidity | 70 | 4320 | > th | dose independent | rect. | 8 | 7 |
| 61 | 36.41 | wind | 3 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 81 | 36.44 | humidity | 80 | 14400 | < th | dose dependent | rect. | 8 | 1 |
| 88 | 36.46 | humidity | 70 | 4320 | < th | dose independent | rect. | 8 | 7 |
| 90 | 36.47 | humidity | 60 | 4320 | > th | dose independent | rect. | 12 | 1 |
| 102 | 36.48 | humidity | 70 | 4320 | > th | dose independent | sin | 2 | NA |
| 106 | 36.48 | humidity | 70 | 4320 | < th | dose independent | rect. | 10 | 3 |
| 160 | 36.50 | humidity | 70 | 4320 | < th | dose independent | rect. | 20 | 19 |
| 165 | 36.51 | wind | 1 | 14400 | < th | dose independent | rect. | 4 | 3 |
| 182 | 36.52 | humidity | 60 | 4320 | < th | dose independent | rect. | 12 | 1 |
| 223 | 36.55 | wind | 1 | 14400 | > th | dose independent | rect. | 4 | 3 |
| 257 | 36.56 | humidity | 70 | 4320 | < th | dose independent | sin | 2 | NA |
| 296 | 36.58 | humidity | 70 | 4320 | > th | dose independent | rect. | 16 | 23 |
| 354 | 36.60 | humidity | 80 | 14400 | < th | dose dependent | sin | 8 | NA |
| 355 | 36.60 | humidity | 50 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 360 | 36.61 | humidity | 70 | 4320 | > th | dose independent | no | NA | NA |
| 431 | 36.61 | humidity | 70 | 4320 | > th | dose independent | rect. | 14 | 23 |
| 451 | 36.63 | humidity | 70 | 4320 | > th | dose independent | rect. | 12 | 23 |
| 507 | 36.65 | humidity | 90 | 4320 | < th | dose dependent | rect. | 23 | 18 |
| 525 | 36.66 | humidity | 90 | 4320 | < th | dose dependent | rect. | 21 | 19 |
| 554 | 36.67 | humidity | 70 | 4320 | < th | dose independent | rect. | 16 | 23 |
| 556 | 36.67 | wind | 3 | 14400 | < th | dose dependent | rect. | 19 | 1 |
| 557 | 36.67 | wind | 1 | 14400 | < th | dose dependent | rect. | 4 | 3 |
| 562 | 36.67 | humidity | 50 | 4320 | > th | dose dependent | rect. | 3 | 12 |
| 565 | 36.67 | humidity | 90 | 4320 | < th | dose dependent | rect. | 3 | 14 |
| 592 | 36.69 | humidity | 70 | 4320 | < th | dose independent | no | NA | NA |
| 675 | 36.69 | humidity | 50 | 4320 | > th | dose dependent | rect. | 23 | 18 |
| 695 | 36.70 | humidity | 70 | 4320 | < th | dose independent | rect. | 14 | 23 |
| 708 | 36.70 | humidity | 50 | 4320 | > th | dose dependent | rect. | 23 | 16 |
| 746 | 36.72 | humidity | 70 | 4320 | < th | dose independent | rect. | 12 | 23 |
| 797 | 36.73 | humidity | 50 | 4320 | > th | dose dependent | sin | 2 | NA |
| 826 | 36.74 | humidity | 90 | 4320 | < th | dose dependent | sin | 2 | NA |
| 852 | 36.75 | radiation | 10 | 30 | > th | dose independent | rect. | 7 | 1 |
| 857 | 36.75 | humidity | 90 | 4320 | < th | dose dependent | sin | 0 | NA |
| 916 | 36.76 | humidity | 90 | 4320 | < th | dose dependent | rect. | 9 | 16 |
| 968 | 36.77 | humidity | 90 | 4320 | < th | dose dependent | rect. | 10 | 14 |
| 989 | 36.78 | wind | 1 | 14400 | < th | dose dependent | rect. | 6 | 1 |