Os01g0850400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to MYBY1 protein (Fragment).
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Os01g0850400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to MYBY1 protein (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 97.04 | 0.463 | 4.6 | 0.586 | 1.63 | 0.989 | 0.357 | 3.82 | -0.202 | 18.6 | 25.25 | 96 | -- | -- |
| 102.17 | 0.471 | 4.65 | 0.132 | 1.56 | 1.34 | 0.534 | -- | -0.324 | 18.6 | 25.27 | 137 | -- | -- |
| 97.29 | 0.459 | 4.59 | 0.606 | 1.61 | 0.992 | -- | 4.05 | -0.195 | 18.6 | 25.22 | 108 | -- | -- |
| 102.64 | 0.472 | 4.64 | 0.119 | 1.61 | 1.45 | -- | -- | -0.257 | 18.6 | 26.6 | 93 | -- | -- |
| 171.65 | 0.61 | 4.64 | -0.0355 | -- | 2.4 | -- | 0.549 | -0.471 | -- | 24.5 | 352 | -- | -- |
| 128.94 | 0.532 | 4.64 | 0.361 | 2.01 | -- | 1.39 | -- | -0.232 | 17.9 | -- | -- | -- | -- |
| 133.61 | 0.541 | 4.64 | 0.349 | 2.02 | -- | -- | -- | -0.227 | 18 | -- | -- | -- | -- |
| 171.74 | 0.61 | 4.65 | -0.109 | -- | 2.44 | -- | -- | -0.491 | -- | 24.5 | 353 | -- | -- |
| 102.99 | 0.473 | 4.64 | -- | 1.62 | 1.47 | -- | -- | -0.264 | 18.6 | 26.72 | 108 | -- | -- |
| 344.14 | 0.867 | 4.6 | 0.29 | -- | -- | -- | -- | -0.273 | -- | -- | -- | -- | -- |
| 136.82 | 0.547 | 4.64 | -- | 2.01 | -- | -- | -- | -0.266 | 18 | -- | -- | -- | -- |
| 172.05 | 0.611 | 4.65 | -- | -- | 2.42 | -- | -- | -0.479 | -- | 24.5 | 352 | -- | -- |
| 346.36 | 0.869 | 4.61 | -- | -- | -- | -- | -- | -0.305 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 96.16 | temperature | 25 | 90 | > th | dose dependent | rect. | 11 | 23 |
| 2 | 96.58 | temperature | 25 | 90 | > th | dose dependent | rect. | 21 | 23 |
| 3 | 97.02 | temperature | 25 | 90 | > th | dose dependent | rect. | 6 | 21 |
| 13 | 97.09 | temperature | 25 | 90 | > th | dose dependent | no | NA | NA |
| 17 | 97.11 | temperature | 25 | 90 | > th | dose dependent | rect. | 1 | 23 |
| 48 | 97.53 | temperature | 25 | 270 | > th | dose dependent | rect. | 19 | 22 |
| 49 | 97.56 | temperature | 25 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 56 | 97.66 | temperature | 25 | 90 | > th | dose dependent | rect. | 6 | 14 |
| 115 | 98.02 | temperature | 25 | 90 | > th | dose dependent | sin | 21 | NA |
| 128 | 98.11 | temperature | 25 | 270 | > th | dose dependent | sin | 1 | NA |
| 143 | 98.20 | temperature | 10 | 90 | > th | dose dependent | rect. | 21 | 23 |
| 290 | 99.02 | temperature | 30 | 270 | < th | dose independent | rect. | 24 | 22 |
| 315 | 99.16 | temperature | 30 | 270 | < th | dose independent | sin | 1 | NA |
| 407 | 99.72 | temperature | 15 | 720 | > th | dose dependent | rect. | 6 | 10 |
| 422 | 99.79 | temperature | 30 | 270 | < th | dose independent | rect. | 3 | 16 |
| 427 | 99.83 | temperature | 30 | 270 | < th | dose independent | rect. | 3 | 18 |
| 485 | 100.24 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 8 |
| 497 | 100.29 | temperature | 25 | 720 | > th | dose dependent | rect. | 6 | 4 |
| 555 | 100.64 | temperature | 25 | 30 | > th | dose dependent | rect. | 17 | 23 |
| 594 | 100.85 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 14 |
| 624 | 101.17 | temperature | 30 | 270 | > th | dose independent | sin | 1 | NA |
| 647 | 101.31 | temperature | 30 | 720 | < th | dose independent | rect. | 3 | 9 |
| 665 | 101.41 | temperature | 30 | 270 | < th | dose independent | rect. | 10 | 23 |
| 676 | 101.43 | temperature | 25 | 90 | > th | dose dependent | rect. | 11 | 16 |
| 698 | 101.51 | temperature | 30 | 270 | > th | dose independent | rect. | 17 | 22 |
| 704 | 101.52 | temperature | 10 | 720 | > th | dose dependent | sin | 1 | NA |
| 712 | 101.55 | temperature | 30 | 270 | < th | dose independent | rect. | 9 | 12 |
| 720 | 101.60 | temperature | 30 | 270 | > th | dose independent | rect. | 8 | 9 |
| 781 | 101.88 | temperature | 30 | 270 | < th | dose independent | rect. | 12 | 23 |
| 782 | 101.88 | temperature | 10 | 90 | > th | dose dependent | no | NA | NA |
| 801 | 102.00 | temperature | 10 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 842 | 102.13 | temperature | 30 | 720 | < th | dose independent | rect. | 18 | 18 |
| 854 | 102.19 | temperature | 30 | 90 | < th | dose independent | rect. | 3 | 23 |
| 857 | 102.21 | temperature | 25 | 90 | > th | dose dependent | rect. | 11 | 9 |
| 940 | 102.54 | temperature | 30 | 720 | < th | dose independent | rect. | 24 | 15 |
| 980 | 102.67 | temperature | 30 | 720 | < th | dose independent | rect. | 1 | 12 |