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Os01g0848300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein prenyltransferase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.69 (0.024) R2 : 0.873
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.55 (0.0597) R2dC : 0.554 R2C : 0.715
β3 : -1.43 (0.0653) R2dE : 0.147 R2E : 0.314
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.199 (0.0508) R2dN8 : 0.00561 R2N8 : 0.0102
σ : 0.451
deviance : 93.8
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C
peak time of C : 12.5
E
wheather : temperature
threshold : 19.6
memory length : 258
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 0.198
open length of G : 5.37

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
90.67 0.447 8.7 -0.117 2.53 -1.45 -0.811 -0.164 -0.212 12.5 19.5 258 0.184 5.37
90.71 0.444 8.69 -0.103 2.53 -1.45 -0.78 -- -0.207 12.5 19.53 259 0.172 5.4
93.32 0.45 8.7 -0.119 2.55 -1.42 -- 0.122 -0.209 12.5 19.55 258 0.2 5.38
93.34 0.45 8.7 -0.133 2.55 -1.41 -- -- -0.214 12.5 19.6 258 0.2 5.38
438.7 0.976 8.78 -0.0197 -- -1.66 -- 0.509 -0.238 -- 18.44 136 0.15 5.7
140.37 0.555 8.74 -0.247 3.09 -- -0.323 -- -0.325 13.7 -- -- -- --
140.77 0.556 8.74 -0.257 3.09 -- -- -- -0.327 13.8 -- -- -- --
423.53 0.959 8.81 0.0861 -- -1.85 -- -- -0.355 -- 18.6 95 0.0167 6.03
93.8 0.451 8.69 -- 2.55 -1.43 -- -- -0.199 12.5 19.6 258 0.198 5.37
722.22 1.26 8.78 -0.383 -- -- -- -- -0.397 -- -- -- -- --
142.51 0.558 8.73 -- 3.1 -- -- -- -0.298 13.8 -- -- -- --
414.41 0.948 8.76 -- -- -2.21 -- -- -0.258 -- 18.46 139 4.46e-05 5.43
726.09 1.26 8.77 -- -- -- -- -- -0.354 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 93.57 temperature 15.0 270 > th dose dependent rect. 24 6
2 93.85 temperature 20.0 270 > th dose independent rect. 24 5
16 97.05 temperature 30.0 720 < th dose dependent rect. 19 6
23 98.56 temperature 30.0 720 < th dose dependent sin 13 NA
25 98.82 temperature 10.0 270 > th dose dependent rect. 14 15
30 99.13 temperature 30.0 720 < th dose dependent rect. 15 16
34 99.27 temperature 30.0 720 < th dose dependent rect. 17 13
36 99.30 temperature 10.0 720 > th dose dependent rect. 17 11
44 99.60 humidity 60.0 270 > th dose dependent rect. 24 5
47 99.68 temperature 30.0 270 < th dose dependent rect. 19 15
55 99.99 wind 9.0 270 < th dose dependent rect. 24 5
61 100.18 temperature 20.0 270 > th dose independent rect. 24 19
62 100.19 wind 5.0 270 < th dose dependent rect. 1 3
65 100.27 humidity 60.0 270 > th dose dependent rect. 1 3
70 100.33 wind 9.0 270 < th dose dependent rect. 1 3
76 100.46 temperature 15.0 270 > th dose independent rect. 14 15
84 100.73 wind 9.0 270 < th dose independent rect. 5 19
86 100.75 wind 1.0 43200 < th dose dependent rect. 8 4
94 100.84 wind 9.0 270 < th dose independent rect. 4 21
97 100.90 precipitation 0.1 270 < th dose independent rect. 24 5
98 100.90 precipitation 0.1 270 < th dose dependent rect. 24 5
101 100.99 radiation 30.0 270 < th dose independent rect. 14 15
105 101.15 precipitation 0.1 270 < th dose independent rect. 1 3
106 101.15 precipitation 0.1 270 < th dose dependent rect. 1 3
113 101.30 wind 1.0 43200 > th dose independent rect. 8 4
114 101.31 temperature 30.0 720 < th dose dependent rect. 21 2
117 101.34 radiation 1.0 270 < th dose independent rect. 24 5
121 101.37 radiation 10.0 270 < th dose dependent rect. 24 5
123 101.39 wind 3.0 270 < th dose independent rect. 1 3
124 101.39 atmosphere 1010.0 270 < th dose independent rect. 24 5
133 101.43 temperature 30.0 270 < th dose independent rect. 24 5
134 101.43 humidity 50.0 270 > th dose independent rect. 24 5
137 101.43 atmosphere 995.0 270 > th dose independent rect. 24 5
141 101.43 temperature 10.0 270 > th dose independent rect. 5 19
142 101.44 wind 9.0 270 < th dose independent rect. 24 5
144 101.45 atmosphere 1015.0 1440 < th dose independent rect. 3 5
148 101.53 temperature 10.0 720 > th dose dependent rect. 16 6
154 101.61 radiation 20.0 90 < th dose dependent rect. 2 11
164 101.66 radiation 20.0 90 < th dose dependent rect. 2 9
168 101.74 temperature 10.0 270 > th dose independent rect. 1 3
170 101.74 temperature 30.0 270 < th dose independent rect. 1 3
171 101.74 humidity 50.0 270 > th dose independent rect. 1 3
174 101.74 atmosphere 995.0 270 > th dose independent rect. 1 3
175 101.74 atmosphere 1010.0 270 < th dose independent rect. 1 3
177 101.74 radiation 1.0 270 < th dose independent rect. 1 3
182 101.74 temperature 10.0 270 > th dose independent rect. 4 21
183 101.74 radiation 1.0 270 < th dose dependent rect. 1 3
191 101.76 wind 9.0 270 < th dose independent rect. 1 3
192 101.76 wind 3.0 270 < th dose independent rect. 24 5
206 101.88 precipitation 0.1 270 < th dose independent rect. 5 19
207 101.88 precipitation 0.1 270 < th dose dependent rect. 5 19
222 102.07 wind 5.0 43200 < th dose dependent rect. 10 5
237 102.27 radiation 10.0 90 < th dose dependent rect. 2 16
244 102.35 temperature 10.0 10 > th dose dependent rect. 2 5
251 102.43 humidity 50.0 270 > th dose independent rect. 5 9
255 102.45 wind 1.0 43200 < th dose independent rect. 8 4
281 102.54 wind 3.0 43200 > th dose independent rect. 10 5
284 102.55 wind 1.0 43200 > th dose dependent rect. 10 7
290 102.61 wind 1.0 43200 > th dose dependent rect. 13 1
311 102.75 radiation 10.0 270 < th dose dependent rect. 24 15
313 102.78 precipitation 0.1 270 < th dose independent rect. 4 21
315 102.78 precipitation 0.1 270 < th dose dependent rect. 4 21
316 102.80 temperature 10.0 270 > th dose independent rect. 5 9
317 102.80 atmosphere 995.0 270 > th dose independent rect. 5 9
318 102.80 atmosphere 1015.0 270 < th dose independent rect. 5 9
324 102.83 radiation 30.0 10 < th dose dependent rect. 2 7
328 102.86 radiation 30.0 10 < th dose dependent rect. 2 10
337 102.91 wind 3.0 43200 < th dose independent rect. 9 6
342 102.92 humidity 60.0 10 > th dose dependent rect. 2 7
345 102.93 wind 9.0 43200 < th dose dependent rect. 13 1
350 102.95 wind 1.0 43200 > th dose dependent rect. 12 3
355 102.97 precipitation 0.1 270 < th dose independent rect. 5 9
358 102.97 precipitation 0.1 270 < th dose dependent rect. 5 9
389 103.11 wind 5.0 10 < th dose dependent rect. 2 7
392 103.14 radiation 10.0 90 < th dose independent rect. 2 9
399 103.17 temperature 10.0 720 > th dose dependent rect. 10 18
404 103.21 wind 3.0 43200 > th dose independent rect. 11 3
420 103.31 wind 1.0 43200 < th dose dependent rect. 11 1
421 103.31 radiation 20.0 90 < th dose dependent rect. 2 7
423 103.33 temperature 20.0 10 > th dose independent rect. 2 5
452 103.44 radiation 20.0 4320 < th dose independent rect. 3 3
454 103.45 wind 5.0 43200 > th dose independent rect. 14 2
468 103.55 wind 5.0 10 < th dose dependent rect. 2 5
471 103.56 wind 9.0 270 < th dose independent rect. 5 9
478 103.57 wind 1.0 270 > th dose independent rect. 5 19
479 103.57 temperature 20.0 90 > th dose independent rect. 2 19
512 103.72 radiation 10.0 90 < th dose independent rect. 2 11
515 103.73 precipitation 0.1 270 < th dose independent rect. 14 15
518 103.73 precipitation 0.1 270 < th dose dependent rect. 14 15
521 103.74 atmosphere 995.0 270 > th dose independent rect. 14 15
527 103.77 wind 5.0 43200 < th dose independent rect. 14 2
619 104.06 wind 3.0 43200 < th dose independent rect. 11 3
622 104.07 wind 1.0 270 > th dose independent rect. 4 21
625 104.08 radiation 10.0 30 < th dose independent rect. 2 20
653 104.19 radiation 10.0 90 < th dose independent rect. 2 16
655 104.19 temperature 15.0 270 > th dose independent rect. 3 23
768 104.56 wind 1.0 270 > th dose independent rect. 20 14
781 104.61 wind 1.0 43200 > th dose dependent sin 21 NA
851 104.73 wind 1.0 43200 > th dose dependent rect. 10 17
860 104.77 wind 9.0 43200 < th dose dependent rect. 10 16
864 104.79 wind 9.0 43200 < th dose dependent sin 21 NA
872 104.81 radiation 10.0 10 < th dose independent rect. 2 5
873 104.81 radiation 10.0 10 < th dose independent rect. 2 8
878 104.81 radiation 40.0 270 < th dose dependent rect. 14 15
905 104.89 temperature 15.0 270 > th dose independent rect. 10 10
910 104.90 wind 9.0 270 < th dose independent rect. 14 15
935 104.96 radiation 10.0 10 < th dose independent rect. 2 10