FiT-DB / Search/ Help/ Sample detail
|
Os01g0848200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Delta 1-pyrroline-5-carboxylate synthetase (P5CS) [Includes: Glutamate 5-kinase (EC 2.7.2.11) (Gamma-glutamyl kinase) (GK); Gamma-glutamyl phosphate reductase (GPR) (EC 1.2.1.41) (Glutamate-5-semialdehyde dehydrogenase) (Glutamyl-gamma-semialdehyde dehydrogenase)].
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 141.13 | 0.558 | 11.5 | -1.77 | 1.29 | -1.48 | -0.524 | -0.201 | -1.54 | 12.4 | 10.11 | 261 | -- | -- |
| 141.15 | 0.553 | 11.5 | -1.74 | 1.29 | -1.49 | -0.545 | -- | -1.53 | 12.4 | 9.693 | 261 | -- | -- |
| 142.06 | 0.555 | 11.5 | -1.85 | 1.32 | -1.47 | -- | -0.601 | -1.56 | 12.3 | 11.65 | 224 | -- | -- |
| 142.32 | 0.556 | 11.5 | -1.77 | 1.32 | -1.48 | -- | -- | -1.54 | 12.3 | 9.808 | 225 | -- | -- |
| 200.02 | 0.659 | 11.5 | -1.42 | -- | -1.73 | -- | 0.894 | -1.47 | -- | -11.13 | 833 | -- | -- |
| 164.6 | 0.601 | 11.6 | -2.07 | 1.17 | -- | -0.298 | -- | -1.75 | 11.1 | -- | -- | -- | -- |
| 164.95 | 0.601 | 11.6 | -2.08 | 1.17 | -- | -- | -- | -1.75 | 11 | -- | -- | -- | -- |
| 200.44 | 0.659 | 11.5 | -1.64 | -- | -1.78 | -- | -- | -1.48 | -- | -5.052 | 806 | -- | -- |
| 200 | 0.659 | 11.4 | -- | 1.18 | -1.73 | -- | -- | -1.2 | 11.1 | 14.4 | 4455 | -- | -- |
| 250.68 | 0.74 | 11.6 | -2.11 | -- | -- | -- | -- | -1.76 | -- | -- | -- | -- | -- |
| 279.09 | 0.781 | 11.5 | -- | 1.19 | -- | -- | -- | -1.52 | 11.1 | -- | -- | -- | -- |
| 249.57 | 0.736 | 11.4 | -- | -- | -1.75 | -- | -- | -1 | -- | 6.923 | 47520 | -- | -- |
| 367.85 | 0.895 | 11.5 | -- | -- | -- | -- | -- | -1.52 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 135.29 | temperature | 10 | 270 | > th | dose dependent | sin | 11 | NA |
| 10 | 137.81 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 21 |
| 11 | 137.86 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 12 | 137.92 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 11 |
| 16 | 138.15 | temperature | 20 | 270 | > th | dose independent | rect. | 19 | 10 |
| 18 | 138.18 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 21 | 138.29 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 5 |
| 28 | 138.55 | temperature | 15 | 720 | > th | dose dependent | rect. | 15 | 14 |
| 31 | 138.60 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 23 |
| 55 | 139.12 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 18 |
| 61 | 139.17 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 69 | 139.30 | temperature | 20 | 720 | > th | dose independent | rect. | 17 | 9 |
| 89 | 139.47 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 10 |
| 100 | 139.62 | temperature | 20 | 720 | > th | dose independent | rect. | 15 | 14 |
| 139 | 139.94 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 183 | 140.34 | temperature | 30 | 1440 | < th | dose dependent | rect. | 24 | 1 |
| 185 | 140.36 | temperature | 20 | 10 | > th | dose independent | rect. | 23 | 7 |
| 200 | 140.43 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 22 |
| 248 | 140.71 | temperature | 25 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 282 | 140.87 | temperature | 20 | 270 | > th | dose independent | sin | 12 | NA |
| 303 | 140.99 | temperature | 20 | 720 | > th | dose independent | sin | 15 | NA |
| 306 | 140.99 | temperature | 25 | 4320 | < th | dose dependent | rect. | 17 | 5 |
| 350 | 141.14 | temperature | 10 | 270 | > th | dose dependent | no | NA | NA |
| 381 | 141.26 | temperature | 30 | 720 | < th | dose independent | rect. | 11 | 6 |
| 403 | 141.35 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 7 |
| 407 | 141.36 | temperature | 25 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 411 | 141.36 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 11 |
| 454 | 141.47 | temperature | 30 | 720 | < th | dose independent | rect. | 21 | 20 |
| 537 | 141.67 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 581 | 141.77 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 586 | 141.78 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 20 |
| 662 | 141.98 | temperature | 20 | 4320 | > th | dose independent | sin | 16 | NA |
| 666 | 141.99 | temperature | 25 | 4320 | < th | dose dependent | sin | 17 | NA |
| 667 | 141.99 | temperature | 15 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 676 | 142.00 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 699 | 142.06 | temperature | 30 | 720 | < th | dose independent | rect. | 5 | 12 |
| 712 | 142.10 | temperature | 20 | 4320 | < th | dose independent | sin | 16 | NA |
| 733 | 142.15 | temperature | 30 | 270 | < th | dose dependent | sin | 11 | NA |
| 737 | 142.16 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 748 | 142.18 | temperature | 25 | 1440 | < th | dose dependent | sin | 13 | NA |
| 759 | 142.21 | temperature | 15 | 4320 | > th | dose dependent | rect. | 20 | 5 |
| 807 | 142.30 | temperature | 30 | 720 | < th | dose independent | rect. | 3 | 14 |
| 823 | 142.32 | temperature | 15 | 10 | > th | dose dependent | rect. | 17 | 23 |
