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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0846800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Regulator of chromosome condensation/beta-lactamase-inhibitor protein II domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.89 (0.0515) R2 : 0.945
β1 : -- (--) R2dD : -- R2D : --
β2 : 10.5 (0.132) R2dC : 0.772 R2C : 0.855
β3 : -3.94 (0.15) R2dE : 0.0856 R2E : 0.175
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.471 (0.108) R2dN8 : 0.00296 R2N8 : -0.00198
σ : 0.965
deviance : 429.65
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_____
C
peak time of C : 8.29
E
wheather : temperature
threshold : 20.72
memory length : 189
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 21.5
open length of G : 5.15

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
396.45 0.936 8.88 -0.436 10.5 -4.18 2.36 3.82 -0.516 8.26 20.8 245 21.1 5.06
413.94 0.948 8.87 -0.417 10.5 -3.79 1.83 -- -0.411 8.31 20.8 196 21.5 5.19
412.22 0.946 8.88 -0.388 10.5 -4.24 -- 3.22 -0.505 8.25 20.7 241 21.2 5.03
420.94 0.956 8.89 -0.61 10.5 -3.84 -- -- -0.46 8.31 20.7 194 21.5 5.2
1203.43 1.62 9.02 0.823 -- -8.19 -- 6.03 0.226 -- 1.24 279 12.3 13
778.05 1.31 8.92 -0.89 11.1 -- 2.03 -- -0.716 9.02 -- -- -- --
792.37 1.32 8.92 -0.82 11.1 -- -- -- -0.715 9.02 -- -- -- --
737.64 1.26 9.27 -0.806 -- -9.47 -- -- -0.725 -- -3.629 366 11.3 13
429.65 0.965 8.89 -- 10.5 -3.94 -- -- -0.471 8.29 20.72 189 21.5 5.15
7837.31 4.14 9.22 -0.837 -- -- -- -- -0.647 -- -- -- -- --
810.09 1.33 8.9 -- 11.1 -- -- -- -0.623 9.03 -- -- -- --
743.28 1.27 9.22 -- -- -9.57 -- -- -0.664 -- -2.565 359 11.3 13.3
7855.78 4.14 9.2 -- -- -- -- -- -0.554 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 411.28 temperature 20 270 > th dose independent rect. 21 5
2 422.88 temperature 20 270 > th dose independent rect. 22 3
13 447.85 temperature 20 270 > th dose independent rect. 23 1
14 449.02 temperature 15 270 > th dose dependent rect. 21 5
25 464.39 temperature 20 90 > th dose independent rect. 7 21
26 466.05 temperature 15 270 > th dose dependent rect. 22 3
30 471.05 temperature 20 270 > th dose independent rect. 7 19
42 476.86 temperature 20 270 > th dose dependent rect. 23 1
83 497.92 temperature 10 270 > th dose dependent rect. 6 20
136 522.40 temperature 20 90 > th dose independent rect. 13 14
146 524.69 temperature 20 10 > th dose independent rect. 12 16
241 547.14 temperature 30 270 < th dose dependent rect. 15 15
261 551.63 temperature 30 90 < th dose dependent rect. 17 14
270 555.08 temperature 20 10 > th dose independent rect. 23 18
286 557.61 temperature 20 90 > th dose independent rect. 22 19
381 571.82 temperature 30 270 < th dose dependent rect. 11 19
382 572.00 temperature 20 10 > th dose independent rect. 23 16
417 576.30 temperature 25 720 < th dose dependent rect. 8 14
471 582.17 temperature 25 720 < th dose dependent rect. 15 5
476 582.31 temperature 15 270 > th dose dependent rect. 19 20
482 583.06 temperature 20 270 > th dose independent sin 15 NA
485 583.43 temperature 25 720 < th dose dependent rect. 17 2
508 584.90 atmosphere 1010 270 < th dose independent rect. 22 3
516 585.14 temperature 25 720 < th dose dependent sin 20 NA
525 585.52 temperature 20 270 < th dose independent rect. 11 17
639 591.43 atmosphere 1010 270 < th dose independent rect. 21 5
711 595.06 temperature 20 10 < th dose independent rect. 14 16
713 595.23 temperature 20 720 > th dose independent sin 19 NA
759 597.23 temperature 20 270 < th dose independent sin 16 NA
771 597.85 temperature 20 10 > th dose independent sin 12 NA
787 598.29 atmosphere 1010 270 < th dose independent rect. 23 1
867 601.48 temperature 20 10 < th dose independent rect. 12 18
896 602.51 temperature 20 720 < th dose independent sin 19 NA
906 602.70 temperature 10 270 > th dose dependent rect. 21 13
954 604.13 temperature 20 720 < th dose independent rect. 9 15
956 604.18 temperature 25 270 < th dose dependent sin 16 NA