Os01g0846600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF248, methyltransferase putative family protein.
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Os01g0846600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF248, methyltransferase putative family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 34.76 | 0.277 | 9.79 | 1.09 | 1.15 | 0.37 | -0.0673 | 2.44 | 0.431 | 13.9 | 11.1 | 1482 | -- | -- |
| 37.63 | 0.286 | 9.83 | 0.584 | 1.16 | 0.368 | -0.103 | -- | 0.385 | 13.8 | 26.2 | 2641 | -- | -- |
| 34.77 | 0.275 | 9.79 | 1.09 | 1.15 | 0.37 | -- | 2.44 | 0.431 | 13.9 | 11.22 | 1469 | -- | -- |
| 37.46 | 0.285 | 9.85 | 0.577 | 1.17 | 0.353 | -- | -- | 0.345 | 13.9 | 25.96 | 2660 | -- | -- |
| 74.84 | 0.405 | 9.89 | 0.485 | -- | 1.7 | -- | 1.29 | 0.152 | -- | 10.23 | 1707 | -- | -- |
| 42.42 | 0.305 | 9.84 | 0.673 | 1.13 | -- | -0.151 | -- | 0.36 | 13.9 | -- | -- | -- | -- |
| 42.5 | 0.305 | 9.84 | 0.669 | 1.13 | -- | -- | -- | 0.359 | 13.9 | -- | -- | -- | -- |
| 74.27 | 0.403 | 9.9 | 0.391 | -- | 1.34 | -- | -- | 0.147 | -- | 22.92 | 4672 | -- | -- |
| 44.3 | 0.31 | 9.88 | -- | 1.19 | 0.474 | -- | -- | 0.216 | 13.9 | 23.5 | 1361 | -- | -- |
| 119.32 | 0.51 | 9.86 | 0.622 | -- | -- | -- | -- | 0.333 | -- | -- | -- | -- | -- |
| 54.29 | 0.345 | 9.86 | -- | 1.12 | -- | -- | -- | 0.285 | 13.9 | -- | -- | -- | -- |
| 76.52 | 0.409 | 9.92 | -- | -- | 1.55 | -- | -- | 0.0537 | -- | 18.4 | 47520 | -- | -- |
| 129.54 | 0.531 | 9.87 | -- | -- | -- | -- | -- | 0.264 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 33.86 | radiation | 40 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 17 | 33.88 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 18 |
| 19 | 33.99 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 4 |
| 23 | 34.20 | temperature | 10 | 720 | > th | dose dependent | sin | 14 | NA |
| 25 | 34.25 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 28 | 34.27 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 1 |
| 29 | 34.28 | radiation | 40 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 48 | 34.34 | humidity | 70 | 720 | > th | dose independent | rect. | 19 | 1 |
| 52 | 34.38 | temperature | 15 | 720 | > th | dose dependent | rect. | 22 | 1 |
| 54 | 34.38 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 6 |
| 65 | 34.43 | temperature | 10 | 1440 | > th | dose dependent | rect. | 16 | 9 |
| 68 | 34.45 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 2 |
| 78 | 34.47 | temperature | 30 | 720 | < th | dose dependent | rect. | 10 | 12 |
| 115 | 34.53 | humidity | 70 | 720 | > th | dose independent | rect. | 19 | 9 |
| 125 | 34.54 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 3 |
| 131 | 34.56 | temperature | 10 | 1440 | > th | dose dependent | sin | 16 | NA |
| 153 | 34.60 | radiation | 1 | 720 | < th | dose independent | rect. | 8 | 13 |
| 163 | 34.60 | radiation | 1 | 720 | < th | dose dependent | rect. | 8 | 13 |
| 212 | 34.69 | temperature | 30 | 1440 | < th | dose dependent | rect. | 22 | 1 |
| 254 | 34.72 | temperature | 10 | 1440 | > th | dose dependent | rect. | 10 | 22 |
| 255 | 34.72 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 22 |
| 266 | 34.73 | temperature | 10 | 1440 | > th | dose dependent | rect. | 16 | 22 |
| 284 | 34.74 | temperature | 10 | 1440 | > th | dose dependent | rect. | 6 | 21 |
| 357 | 34.77 | temperature | 10 | 1440 | > th | dose dependent | no | NA | NA |
| 385 | 34.78 | radiation | 30 | 43200 | < th | dose independent | rect. | 17 | 9 |
| 471 | 34.81 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 23 |
| 496 | 34.83 | temperature | 30 | 1440 | < th | dose dependent | sin | 15 | NA |
| 616 | 34.91 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 21 |
| 627 | 34.92 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 19 |
| 689 | 34.95 | temperature | 30 | 1440 | < th | dose dependent | rect. | 13 | 22 |
| 706 | 34.96 | temperature | 30 | 1440 | < th | dose dependent | rect. | 13 | 20 |
| 707 | 34.96 | temperature | 30 | 1440 | < th | dose dependent | rect. | 6 | 21 |
| 767 | 35.00 | radiation | 30 | 43200 | < th | dose independent | rect. | 17 | 11 |
| 786 | 35.00 | temperature | 30 | 1440 | < th | dose dependent | rect. | 10 | 23 |
| 807 | 35.02 | temperature | 30 | 1440 | < th | dose dependent | no | NA | NA |
| 927 | 35.07 | temperature | 30 | 1440 | < th | dose dependent | rect. | 21 | 23 |
| 929 | 35.08 | temperature | 30 | 720 | < th | dose dependent | sin | 20 | NA |
| 981 | 35.11 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 8 |