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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0846400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.05 (0.0527) R2 : 0.574
β1 : 3.17 (0.193) R2dD : 0.267 R2D : 0.177
β2 : 3.06 (0.181) R2dC : 0.473 R2C : -0.105
β3 : -3.38 (0.21) R2dE : 0.433 R2E : -0.219
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.815 (0.112) R2dN8 : 0.0655 R2N8 : 0.00616
σ : 0.985
deviance : 446.93
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_____
C
peak time of C : 5.16
E
wheather : humidity
threshold : 69.7
memory length : 686
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 18.9
open length of G : 4.38

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
440.77 0.986 6.05 3.26 2.95 -3.25 1.41 -1.84 0.825 5.25 70.62 693 19 4.15
447.78 0.986 6.05 3.28 2.85 -3.2 0.445 -- 0.838 5.27 70.58 683 18.8 4.4
443.64 0.981 6.05 3.24 2.92 -3.21 -- -1.1 0.816 5.32 71.03 688 19 4.2
446.93 0.985 6.05 3.17 3.06 -3.38 -- -- 0.815 5.16 69.7 686 18.9 4.38
667.44 1.2 6.13 3.37 -- -2.52 -- -0.384 0.747 -- 41.12 1494 19.1 4.76
589.97 1.14 6.06 3.04 1.86 -- 0.415 -- 0.787 8.4 -- -- -- --
590.51 1.14 6.06 3.06 1.86 -- -- -- 0.787 8.39 -- -- -- --
588.15 1.13 6.17 2.76 -- -3.74 -- -- 0.895 -- 45.54 1812 12 7.88
716.75 1.25 6.07 -- 3.41 -3.57 -- -- 0.572 5.05 67 688 19 4.25
782.7 1.31 6.11 3.07 -- -- -- -- 0.806 -- -- -- -- --
836.49 1.35 6.13 -- 1.87 -- -- -- 0.446 8.27 -- -- -- --
757.36 1.28 6.18 -- -- -3.64 -- -- 0.455 -- 20.85 2059 10.4 8.78
1030.55 1.5 6.18 -- -- -- -- -- 0.466 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 443.13 humidity 70 720 > th dose dependent rect. 19 4
12 453.01 humidity 90 720 < th dose dependent rect. 18 7
19 454.77 humidity 60 720 > th dose dependent rect. 17 15
22 455.11 humidity 90 720 < th dose dependent rect. 18 14
29 455.87 humidity 90 720 > th dose dependent rect. 14 10
31 455.91 humidity 90 720 > th dose dependent rect. 12 12
34 455.99 humidity 90 720 < th dose dependent rect. 18 10
36 456.09 humidity 70 720 > th dose dependent sin 15 NA
37 456.14 humidity 90 720 > th dose dependent rect. 9 15
40 456.31 humidity 70 720 > th dose dependent rect. 15 17
89 459.88 humidity 80 720 > th dose dependent rect. 5 19
98 460.58 humidity 90 720 > th dose dependent rect. 7 17
159 463.79 humidity 90 720 < th dose dependent sin 12 NA
177 464.83 humidity 90 720 > th dose dependent sin 20 NA
178 464.84 humidity 80 720 < th dose independent rect. 16 6
184 465.15 humidity 80 1440 < th dose independent sin 3 NA
193 465.48 humidity 80 1440 < th dose independent rect. 1 16
225 466.36 humidity 80 1440 > th dose independent rect. 1 16
228 466.40 humidity 80 720 > th dose independent rect. 16 6
261 467.15 humidity 80 1440 > th dose independent sin 3 NA
284 467.51 humidity 90 720 > th dose independent rect. 18 5
303 467.83 humidity 80 720 < th dose independent rect. 18 3
304 467.84 humidity 90 720 > th dose independent rect. 6 18
408 469.96 humidity 90 720 > th dose independent rect. 12 12
409 469.96 humidity 90 720 > th dose independent rect. 9 15
435 470.37 humidity 90 720 < th dose independent rect. 8 16
500 471.58 humidity 80 720 < th dose independent sin 17 NA
522 472.06 humidity 70 720 > th dose dependent rect. 15 23
550 472.77 humidity 80 720 > th dose independent rect. 15 17
557 472.91 humidity 70 1440 > th dose independent rect. 19 20
563 473.02 humidity 80 720 > th dose independent sin 16 NA
578 473.26 humidity 70 720 > th dose dependent no NA NA
589 473.40 humidity 70 1440 < th dose independent rect. 19 20
604 473.61 humidity 80 1440 < th dose dependent sin 8 NA
651 474.40 humidity 60 1440 > th dose dependent rect. 2 14
658 474.47 humidity 90 720 < th dose independent rect. 5 19
662 474.53 humidity 60 1440 > th dose dependent rect. 19 21
663 474.56 humidity 80 720 > th dose independent rect. 11 21
723 475.14 humidity 60 1440 > th dose dependent rect. 22 18
775 475.74 humidity 90 1440 < th dose dependent sin 5 NA
785 475.79 humidity 90 720 < th dose independent rect. 3 21
800 475.95 humidity 60 1440 > th dose dependent sin 3 NA
809 476.10 humidity 90 1440 < th dose dependent rect. 19 20
831 476.30 humidity 90 1440 < th dose dependent rect. 22 17
843 476.46 humidity 70 1440 > th dose independent rect. 9 6
844 476.48 humidity 90 1440 < th dose dependent rect. 2 13
849 476.51 humidity 60 1440 > th dose dependent rect. 22 22
967 477.42 humidity 70 1440 < th dose independent rect. 9 6