Os01g0846300 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0846300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Protein phosphatase 2C.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	12.5	(0.035)	R²	:	0.531
β₁	:	1.26	(0.128)	R²_dD	:	0.102	R²_D	:	0.0316
β₂	:	0.854	(0.0893)	R²_dC	:	0.0926	R²_C	:	0.0841
β₃	:	-3.33	(0.197)	R²_dE	:	0.298	R²_E	:	0.291
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	0.509	(0.0751)	R²_dN8	:	0.0639	R²_N8	:	0.0598
σ	:	0.652
deviance	:	196.15
__

_____

C
peak time of C	:	7.72
E
wheather	:	humidity
threshold	:	90.54
memory length	:	686
response mode	:	> th
dose dependency	:	dose dependent
G
type of G	:	rect.
peak or start time of G	:	19.9
open length of G	:	0.831

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
190.15	0.648	12.5	1.13	0.844	-3.3	0.496	2.47	0.489	7.59	90.5	669	20	0.998
196.13	0.652	12.5	1.19	0.836	-3.31	0.637	--	0.494	7.47	90.51	674	20	0.867
186.48	0.636	12.5	1.18	0.843	-3.59	--	3.12	0.492	7.76	90.72	685	19.9	0.833
196.15	0.652	12.5	1.26	0.854	-3.33	--	--	0.509	7.72	90.54	686	19.9	0.831
222.59	0.695	12.5	1.17	--	-3.82	--	3.54	0.497	--	90.69	596	19.9	0.883
308.79	0.824	12.4	1.17	0.908	--	0.227	--	0.688	9.33	--	--	--	--
308.97	0.823	12.4	1.17	0.906	--	--	--	0.689	9.38	--	--	--	--
231.91	0.709	12.5	1.26	--	-3.47	--	--	0.539	--	90.45	594	19.9	0.892
238.14	0.719	12.5	--	0.854	-3.18	--	--	0.499	7.69	90.62	684	20	0.867
357.03	0.883	12.4	1.17	--	--	--	--	0.692	--	--	--	--	--
345.29	0.869	12.4	--	0.906	--	--	--	0.558	9.28	--	--	--	--
273.48	0.77	12.5	--	--	-3.36	--	--	0.39	--	90.47	594	19.9	0.883
393.08	0.925	12.5	--	--	--	--	--	0.562	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	207.09	humidity	90	720	> th	dose dependent	rect.	20	1
2	213.01	humidity	90	720	> th	dose dependent	rect.	19	4
22	225.45	humidity	70	720	> th	dose dependent	rect.	17	5
23	225.47	radiation	1	720	< th	dose dependent	sin	15	NA
25	225.83	radiation	1	720	< th	dose dependent	sin	21	NA
40	227.10	radiation	1	720	> th	dose independent	rect.	8	22
41	227.17	radiation	1	720	< th	dose dependent	rect.	5	22
42	227.21	humidity	90	720	> th	dose dependent	rect.	9	15
47	227.34	radiation	1	720	< th	dose dependent	rect.	14	13
65	229.01	radiation	1	720	< th	dose dependent	rect.	20	23
75	229.76	radiation	1	720	< th	dose independent	sin	15	NA
77	229.88	radiation	1	1440	< th	dose dependent	rect.	13	4
83	230.09	radiation	1	720	< th	dose dependent	rect.	6	13
84	230.11	radiation	1	720	< th	dose dependent	rect.	14	17
91	230.31	radiation	1	720	> th	dose independent	sin	15	NA
95	230.40	radiation	1	1440	< th	dose dependent	rect.	11	18
96	230.44	radiation	1	1440	< th	dose dependent	rect.	11	8
100	230.50	radiation	1	1440	< th	dose dependent	rect.	11	13
112	230.63	radiation	1	720	< th	dose independent	sin	21	NA
119	230.84	radiation	1	720	> th	dose independent	sin	21	NA
180	231.84	radiation	1	720	< th	dose independent	rect.	14	13
185	231.91	humidity	70	720	> th	dose dependent	sin	16	NA
249	233.04	radiation	1	1440	> th	dose independent	rect.	11	19
270	233.52	radiation	1	720	< th	dose independent	rect.	5	22
291	233.89	radiation	1	1440	< th	dose independent	rect.	11	19
297	234.00	radiation	1	720	< th	dose independent	rect.	7	19
308	234.17	humidity	80	720	> th	dose independent	rect.	15	6
318	234.32	radiation	1	720	< th	dose independent	rect.	14	17
349	235.01	radiation	1	720	< th	dose independent	rect.	14	4
353	235.08	radiation	1	720	> th	dose independent	rect.	16	14
356	235.13	radiation	1	720	< th	dose independent	rect.	10	16
364	235.23	radiation	1	1440	> th	dose independent	rect.	11	8
420	235.70	humidity	80	720	< th	dose independent	rect.	15	6
421	235.70	humidity	90	720	> th	dose dependent	sin	19	NA
448	235.93	radiation	1	720	< th	dose independent	rect.	20	23
516	236.67	radiation	1	1440	< th	dose independent	rect.	11	8
551	237.02	radiation	1	720	> th	dose independent	rect.	8	11
561	237.03	humidity	80	720	> th	dose independent	rect.	11	11
584	237.15	radiation	1	720	< th	dose dependent	no	NA	NA
628	237.40	radiation	1	720	< th	dose independent	rect.	7	12
632	237.42	radiation	1	1440	< th	dose dependent	rect.	2	15
633	237.42	radiation	1	1440	< th	dose dependent	rect.	22	19
639	237.46	humidity	60	720	> th	dose dependent	rect.	15	16
691	237.85	radiation	1	720	< th	dose independent	rect.	14	9
697	237.90	radiation	1	720	< th	dose independent	rect.	7	16
784	238.51	humidity	80	1440	< th	dose independent	rect.	1	16
786	238.56	humidity	80	1440	< th	dose independent	rect.	3	14
796	238.60	humidity	90	720	> th	dose independent	rect.	20	1
922	239.11	humidity	80	1440	< th	dose independent	sin	1	NA
933	239.17	radiation	1	720	> th	dose independent	rect.	16	23
996	239.67	radiation	1	720	> th	dose independent	no	NA	NA
997	239.67	radiation	1	720	> th	dose independent	rect.	4	15