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Os01g0844500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Peptidase A1, pepsin family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.75 (0.0389) R2 : 0.555
β1 : -1.21 (0.149) R2dD : 0.077 R2D : 0.152
β2 : 1.61 (0.0927) R2dC : 0.295 R2C : 0.291
β3 : 1.07 (0.201) R2dE : 0.0336 R2E : 0.0848
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 4.8 (0.77) R2dD*E : 0.0485 R2D*E : 0.107
γ1 : 0.147 (0.0837) R2dN8 : 0.00428 R2N8 : 0.0163
σ : 0.709
deviance : 231.91
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_____
C
peak time of C : 9.63
E
wheather : precipitation
threshold : 0.491
memory length : 5300
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
217.83 0.693 8.75 -1.14 1.59 1.1 -1.93 4.67 0.147 9.7 0.5048 5285 -- --
232.84 0.711 8.72 -1.21 1.65 1.33 -1.95 -- 0.118 9.6 1.03 5140 -- --
231.91 0.709 8.75 -1.21 1.61 1.07 -- 4.8 0.147 9.63 0.491 5300 -- --
247.67 0.733 8.71 -1.34 1.62 1.29 -- -- 0.142 9.68 1.377 5170 -- --
384.71 0.914 8.78 -1.11 -- 0.72 -- 5.01 0.218 -- 0.7007 4774 -- --
262.91 0.76 8.67 -1.63 1.58 -- -1.95 -- 0.246 9.71 -- -- -- --
277.31 0.78 8.68 -1.71 1.59 -- -- -- 0.243 9.69 -- -- -- --
389.6 0.919 8.74 -1.25 -- 1.68 -- -- 0.16 -- 1.546 2221 -- --
284.56 0.786 8.71 -- 1.66 2.07 -- -- 0.211 9.52 1.416 2458 -- --
428.1 0.967 8.72 -1.72 -- -- -- -- 0.245 -- -- -- -- --
354.21 0.88 8.63 -- 1.6 -- -- -- 0.433 9.77 -- -- -- --
424.71 0.96 8.72 -- -- 2.27 -- -- 0.233 -- 1.256 2221 -- --
506.35 1.05 8.68 -- -- -- -- -- 0.436 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 209.93 wind 1.0 43200 < th dose independent rect. 1 1
2 210.52 wind 1.0 43200 > th dose independent rect. 1 1
3 211.46 humidity 80.0 43200 < th dose dependent rect. 22 1
4 212.01 wind 1.0 43200 > th dose dependent rect. 6 1
8 212.94 humidity 80.0 43200 < th dose independent rect. 23 2
9 212.98 humidity 80.0 43200 < th dose dependent rect. 24 1
12 213.12 precipitation 0.1 14400 > th dose independent rect. 13 13
13 213.14 precipitation 0.1 14400 < th dose independent rect. 13 13
14 213.14 precipitation 0.1 14400 < th dose dependent rect. 13 13
15 213.22 wind 9.0 43200 < th dose dependent rect. 6 1
20 213.36 wind 3.0 43200 > th dose independent rect. 4 3
22 213.41 wind 3.0 43200 < th dose independent rect. 4 3
38 213.73 humidity 80.0 43200 < th dose independent rect. 23 5
48 213.82 humidity 80.0 43200 > th dose independent rect. 3 1
54 213.93 wind 3.0 43200 < th dose independent rect. 6 1
55 213.95 humidity 80.0 43200 < th dose independent rect. 22 9
56 213.97 humidity 80.0 43200 < th dose independent rect. 3 1
57 213.98 wind 3.0 43200 < th dose independent rect. 2 8
73 214.15 wind 3.0 43200 > th dose independent rect. 2 8
74 214.17 precipitation 0.1 14400 > th dose independent rect. 16 10
78 214.21 precipitation 0.1 14400 < th dose independent rect. 16 10
79 214.21 precipitation 0.1 14400 > th dose dependent rect. 13 1
81 214.21 precipitation 0.1 14400 < th dose dependent rect. 16 10
85 214.27 wind 3.0 43200 < th dose independent rect. 4 6
89 214.28 humidity 80.0 14400 > th dose independent rect. 14 1
94 214.31 humidity 80.0 43200 > th dose independent rect. 24 2
107 214.39 humidity 80.0 43200 > th dose independent rect. 23 8
111 214.43 humidity 80.0 14400 < th dose independent rect. 14 1
114 214.45 humidity 80.0 43200 > th dose independent rect. 23 6
123 214.52 radiation 30.0 1440 < th dose dependent rect. 18 2
132 214.60 radiation 1.0 4320 < th dose independent rect. 18 2
155 214.70 precipitation 0.1 14400 > th dose independent rect. 17 4
162 214.74 precipitation 0.1 14400 < th dose independent rect. 17 4
164 214.74 precipitation 0.1 14400 < th dose dependent rect. 17 4
172 214.81 precipitation 0.1 14400 > th dose independent sin 18 NA
176 214.83 precipitation 0.1 4320 > th dose dependent rect. 13 4
179 214.85 precipitation 0.1 14400 < th dose independent sin 18 NA
183 214.85 precipitation 0.1 14400 < th dose dependent sin 18 NA
186 214.87 humidity 80.0 43200 < th dose independent rect. 3 4
201 214.96 wind 3.0 43200 < th dose independent rect. 3 10
238 215.10 wind 3.0 43200 > th dose independent rect. 3 11
257 215.21 radiation 1.0 4320 < th dose independent rect. 18 11
262 215.24 wind 1.0 43200 < th dose dependent rect. 1 1
328 215.60 humidity 70.0 14400 < th dose dependent rect. 16 16
357 215.73 humidity 70.0 14400 < th dose independent rect. 17 15
358 215.73 humidity 70.0 14400 < th dose dependent rect. 16 5
389 215.91 radiation 1.0 4320 > th dose independent rect. 18 1
444 216.06 humidity 70.0 14400 < th dose independent rect. 17 5
469 216.18 precipitation 0.1 4320 > th dose dependent rect. 5 12
490 216.28 humidity 80.0 14400 > th dose independent rect. 13 5
499 216.36 precipitation 0.1 4320 > th dose independent rect. 13 4
501 216.39 precipitation 0.1 14400 < th dose independent rect. 13 1
503 216.39 precipitation 0.1 14400 < th dose dependent rect. 13 1
504 216.40 wind 3.0 43200 > th dose independent sin 6 NA
505 216.40 precipitation 0.1 14400 > th dose independent rect. 13 1
523 216.53 wind 3.0 43200 < th dose independent sin 6 NA
524 216.54 precipitation 0.1 4320 < th dose independent rect. 13 4
525 216.54 precipitation 0.1 4320 < th dose dependent rect. 13 4
556 216.72 humidity 80.0 14400 > th dose dependent rect. 14 5
581 216.92 humidity 80.0 14400 > th dose dependent rect. 17 2
585 216.96 wind 3.0 43200 < th dose dependent rect. 3 9
616 217.13 precipitation 0.1 14400 > th dose dependent rect. 5 1
622 217.16 precipitation 0.1 14400 > th dose dependent rect. 13 13
624 217.17 wind 3.0 43200 < th dose dependent rect. 1 9
631 217.19 wind 3.0 43200 < th dose dependent rect. 3 7
652 217.33 humidity 80.0 43200 < th dose dependent rect. 5 1
655 217.36 humidity 90.0 14400 > th dose independent sin 16 NA
656 217.37 humidity 90.0 14400 > th dose independent rect. 17 1
669 217.43 humidity 90.0 14400 > th dose independent rect. 16 10
687 217.51 wind 3.0 43200 > th dose independent rect. 20 14
692 217.52 precipitation 0.1 14400 > th dose dependent rect. 17 3
718 217.62 precipitation 0.1 43200 > th dose dependent rect. 19 1
723 217.65 precipitation 0.1 14400 < th dose independent rect. 17 1
727 217.65 precipitation 0.1 14400 < th dose dependent rect. 17 1
753 217.75 humidity 90.0 14400 > th dose independent rect. 13 13
762 217.79 wind 5.0 43200 < th dose dependent rect. 5 8
803 217.95 precipitation 0.1 14400 < th dose independent rect. 5 1
804 217.95 precipitation 0.1 14400 < th dose dependent rect. 5 1
808 217.97 wind 5.0 43200 < th dose dependent sin 5 NA
809 217.97 wind 5.0 43200 < th dose dependent rect. 24 13
831 218.05 precipitation 0.1 4320 > th dose dependent rect. 5 9
845 218.13 precipitation 0.1 14400 > th dose independent rect. 5 1
851 218.14 wind 9.0 43200 < th dose dependent rect. 3 12
854 218.15 precipitation 0.1 14400 > th dose dependent rect. 13 7
856 218.16 humidity 90.0 14400 < th dose independent rect. 13 9
861 218.18 wind 9.0 43200 < th dose dependent sin 4 NA
863 218.18 wind 1.0 43200 > th dose dependent rect. 3 12
872 218.22 wind 1.0 43200 > th dose dependent sin 4 NA
882 218.27 humidity 90.0 14400 < th dose independent sin 17 NA
893 218.29 humidity 70.0 14400 > th dose independent rect. 17 15
903 218.31 wind 9.0 43200 < th dose dependent rect. 5 9
907 218.32 wind 9.0 43200 < th dose dependent rect. 24 15
922 218.37 precipitation 0.1 4320 > th dose independent sin 1 NA
927 218.37 wind 1.0 43200 > th dose dependent rect. 4 10
935 218.40 humidity 60.0 14400 < th dose independent rect. 15 5
952 218.42 precipitation 0.1 4320 < th dose independent sin 1 NA
953 218.42 precipitation 0.1 4320 < th dose dependent sin 1 NA
961 218.45 wind 1.0 43200 > th dose dependent rect. 24 15
970 218.48 humidity 70.0 14400 < th dose dependent sin 12 NA
981 218.51 humidity 60.0 14400 > th dose independent rect. 15 5
998 218.54 humidity 60.0 14400 > th dose independent rect. 15 14
999 218.54 humidity 60.0 14400 > th dose independent rect. 15 16