Os01g0844400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, DHHC-type domain containing protein.
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Os01g0844400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, DHHC-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32.79 | 0.269 | 9.42 | 0.382 | 0.604 | -0.382 | -0.943 | -2.27 | 0.111 | 5.36 | 20.39 | 8 | -- | -- |
| 35.81 | 0.279 | 9.37 | 0.763 | 0.516 | -0.607 | -0.702 | -- | 0.223 | 5.77 | 24.13 | 13 | -- | -- |
| 34.46 | 0.273 | 9.41 | 0.458 | 0.599 | -0.373 | -- | -1.81 | 0.133 | 5.28 | 21.72 | 3 | -- | -- |
| 36.76 | 0.282 | 9.38 | 0.75 | 0.55 | -0.549 | -- | -- | 0.209 | 5.45 | 24.1 | 2 | -- | -- |
| 47.91 | 0.322 | 9.4 | 0.633 | -- | -0.843 | -- | -1.55 | 0.208 | -- | 24.1 | 29 | -- | -- |
| 41.36 | 0.301 | 9.39 | 0.655 | 0.741 | -- | -0.177 | -- | 0.141 | 4.78 | -- | -- | -- | -- |
| 41.43 | 0.301 | 9.39 | 0.656 | 0.739 | -- | -- | -- | 0.141 | 4.72 | -- | -- | -- | -- |
| 47.67 | 0.322 | 9.38 | 0.831 | -- | -0.927 | -- | -- | 0.258 | -- | 24.1 | 113 | -- | -- |
| 50.69 | 0.333 | 9.4 | -- | 0.63 | -0.366 | -- | -- | 0.0973 | 5.1 | 24.6 | 2 | -- | -- |
| 70.42 | 0.392 | 9.4 | 0.684 | -- | -- | -- | -- | 0.161 | -- | -- | -- | -- | -- |
| 52.77 | 0.34 | 9.41 | -- | 0.751 | -- | -- | -- | 0.0683 | 4.69 | -- | -- | -- | -- |
| 65.38 | 0.377 | 9.4 | -- | -- | -0.796 | -- | -- | 0.151 | -- | 24.2 | 121 | -- | -- |
| 82.75 | 0.425 | 9.42 | -- | -- | -- | -- | -- | 0.0848 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 30.35 | temperature | 15 | 10 | > th | dose dependent | rect. | 7 | 21 |
| 2 | 30.46 | temperature | 15 | 90 | > th | dose dependent | rect. | 7 | 20 |
| 35 | 31.47 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 17 |
| 43 | 31.56 | temperature | 20 | 90 | > th | dose dependent | sin | 3 | NA |
| 51 | 31.65 | temperature | 20 | 10 | > th | dose dependent | sin | 1 | NA |
| 66 | 31.75 | temperature | 25 | 270 | > th | dose independent | sin | 5 | NA |
| 108 | 32.08 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 13 |
| 128 | 32.18 | temperature | 20 | 270 | > th | dose dependent | rect. | 5 | 8 |
| 130 | 32.19 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 9 |
| 141 | 32.26 | temperature | 25 | 270 | > th | dose independent | rect. | 24 | 13 |
| 148 | 32.28 | temperature | 10 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 170 | 32.39 | temperature | 25 | 270 | > th | dose dependent | sin | 7 | NA |
| 227 | 32.66 | temperature | 10 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 231 | 32.67 | temperature | 20 | 90 | > th | dose dependent | rect. | 17 | 23 |
| 237 | 32.68 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 245 | 32.71 | temperature | 20 | 90 | > th | dose dependent | rect. | 23 | 16 |
| 260 | 32.75 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 296 | 32.84 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 305 | 32.87 | temperature | 20 | 10 | > th | dose dependent | no | NA | NA |
| 322 | 32.92 | temperature | 20 | 90 | > th | dose dependent | rect. | 21 | 18 |
| 324 | 32.92 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 327 | 32.93 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 333 | 32.94 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 17 |
| 335 | 32.94 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 21 |
| 338 | 32.95 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 362 | 33.00 | temperature | 25 | 10 | > th | dose dependent | rect. | 21 | 19 |
| 374 | 33.03 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 14 |
| 411 | 33.10 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 415 | 33.12 | temperature | 25 | 90 | > th | dose independent | rect. | 1 | 18 |
| 423 | 33.13 | temperature | 25 | 10 | > th | dose dependent | rect. | 1 | 15 |
| 440 | 33.16 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 7 |
| 484 | 33.22 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 487 | 33.23 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 525 | 33.28 | temperature | 25 | 270 | < th | dose independent | rect. | 9 | 22 |
| 568 | 33.33 | temperature | 20 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 602 | 33.39 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 616 | 33.41 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 14 |
| 624 | 33.41 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 630 | 33.42 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 638 | 33.43 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 707 | 33.52 | temperature | 25 | 90 | > th | dose independent | rect. | 7 | 12 |
| 719 | 33.52 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 738 | 33.54 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 745 | 33.54 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 753 | 33.55 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 836 | 33.63 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 837 | 33.63 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 855 | 33.65 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 22 |
| 937 | 33.73 | temperature | 25 | 10 | > th | dose independent | rect. | 7 | 12 |
| 966 | 33.77 | temperature | 25 | 10 | > th | dose independent | rect. | 7 | 9 |