Os01g0844300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Peptidylprolyl isomerase.
FiT-DB / Search/ Help/ Sample detail
|
Os01g0844300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Peptidylprolyl isomerase.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 236.68 | 0.723 | 4.54 | -2.1 | 1.11 | 2.96 | -1.79 | 4.14 | -0.465 | 11.8 | 19.7 | 3594 | -- | -- |
| 242.07 | 0.725 | 4.42 | -1.85 | 1.12 | 1.44 | -1.43 | -- | -0.345 | 11.8 | 22.2 | 3792 | -- | -- |
| 250.08 | 0.737 | 4.56 | -2.1 | 1.12 | 3.11 | -- | 4.34 | -0.472 | 11.9 | 19.13 | 3879 | -- | -- |
| 254.15 | 0.742 | 4.43 | -2 | 1.12 | 1.31 | -- | -- | -0.37 | 12 | 22.4 | 3747 | -- | -- |
| 323.94 | 0.838 | 4.54 | -2.22 | -- | 3.12 | -- | 3.68 | -0.46 | -- | 19.25 | 2351 | -- | -- |
| 263.9 | 0.762 | 4.5 | -2.59 | 1.16 | -- | -1.76 | -- | -0.664 | 11.9 | -- | -- | -- | -- |
| 277.27 | 0.78 | 4.5 | -2.66 | 1.17 | -- | -- | -- | -0.671 | 12 | -- | -- | -- | -- |
| 324.8 | 0.839 | 4.45 | -2.1 | -- | 1.41 | -- | -- | -0.313 | -- | 26.7 | 2410 | -- | -- |
| 249.57 | 0.736 | 4.28 | -- | 1.12 | 2.36 | -- | -- | 0.329 | 12 | 35.92 | 47520 | -- | -- |
| 363.51 | 0.891 | 4.53 | -2.7 | -- | -- | -- | -- | -0.688 | -- | -- | -- | -- | -- |
| 464.01 | 1.01 | 4.44 | -- | 1.21 | -- | -- | -- | -0.375 | 12.2 | -- | -- | -- | -- |
| 328.62 | 0.844 | 4.3 | -- | -- | 2.42 | -- | -- | 0.337 | -- | 40.92 | 47520 | -- | -- |
| 555.58 | 1.1 | 4.46 | -- | -- | -- | -- | -- | -0.388 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 222.07 | wind | 1 | 43200 | < th | dose dependent | rect. | 6 | 3 |
| 2 | 223.01 | humidity | 70 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 4 | 223.56 | humidity | 70 | 43200 | > th | dose dependent | rect. | 5 | 3 |
| 8 | 224.04 | humidity | 90 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 10 | 224.30 | wind | 9 | 14400 | < th | dose dependent | sin | 15 | NA |
| 11 | 224.35 | humidity | 50 | 43200 | > th | dose dependent | rect. | 23 | 14 |
| 12 | 224.35 | humidity | 90 | 43200 | < th | dose dependent | rect. | 20 | 19 |
| 20 | 224.42 | wind | 1 | 14400 | > th | dose dependent | sin | 15 | NA |
| 27 | 224.44 | wind | 9 | 14400 | < th | dose dependent | rect. | 14 | 15 |
| 38 | 224.50 | wind | 1 | 14400 | > th | dose dependent | rect. | 14 | 15 |
| 44 | 224.53 | humidity | 50 | 43200 | > th | dose dependent | sin | 6 | NA |
| 47 | 224.53 | wind | 9 | 14400 | < th | dose dependent | rect. | 13 | 17 |
| 50 | 224.55 | humidity | 80 | 43200 | > th | dose independent | rect. | 20 | 22 |
| 62 | 224.59 | humidity | 80 | 43200 | < th | dose independent | rect. | 19 | 22 |
| 63 | 224.59 | wind | 1 | 43200 | < th | dose dependent | rect. | 5 | 6 |
| 101 | 224.70 | humidity | 80 | 43200 | < th | dose independent | rect. | 10 | 22 |
| 110 | 224.72 | wind | 1 | 43200 | < th | dose dependent | rect. | 4 | 8 |
| 126 | 224.75 | humidity | 80 | 43200 | > th | dose independent | rect. | 10 | 22 |
| 132 | 224.76 | wind | 9 | 14400 | < th | dose dependent | rect. | 15 | 12 |
| 155 | 224.80 | humidity | 80 | 43200 | > th | dose independent | rect. | 12 | 23 |
| 177 | 224.84 | humidity | 80 | 43200 | > th | dose independent | no | NA | NA |
| 188 | 224.85 | humidity | 80 | 43200 | > th | dose independent | rect. | 5 | 23 |
| 193 | 224.86 | humidity | 80 | 43200 | > th | dose independent | rect. | 15 | 23 |
| 204 | 224.88 | humidity | 80 | 43200 | < th | dose independent | rect. | 5 | 23 |
| 210 | 224.89 | humidity | 80 | 43200 | < th | dose independent | no | NA | NA |
| 211 | 224.89 | humidity | 80 | 43200 | < th | dose independent | rect. | 12 | 15 |
| 218 | 224.89 | wind | 1 | 14400 | > th | dose dependent | rect. | 15 | 12 |
| 248 | 224.94 | humidity | 70 | 43200 | > th | dose independent | rect. | 21 | 18 |
| 260 | 224.96 | humidity | 80 | 43200 | > th | dose independent | rect. | 12 | 16 |
| 272 | 224.97 | humidity | 80 | 43200 | < th | dose independent | rect. | 15 | 23 |
| 299 | 225.00 | humidity | 90 | 43200 | < th | dose dependent | sin | 5 | NA |
| 305 | 225.01 | wind | 1 | 43200 | < th | dose independent | rect. | 9 | 6 |
| 336 | 225.03 | humidity | 50 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 382 | 225.09 | humidity | 80 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 399 | 225.11 | wind | 1 | 43200 | < th | dose independent | rect. | 12 | 21 |
| 431 | 225.14 | wind | 1 | 43200 | > th | dose independent | rect. | 13 | 20 |
| 435 | 225.14 | humidity | 90 | 43200 | < th | dose dependent | rect. | 20 | 4 |
| 454 | 225.16 | wind | 5 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 468 | 225.17 | wind | 5 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 526 | 225.23 | wind | 1 | 43200 | < th | dose dependent | rect. | 2 | 22 |
| 639 | 225.35 | humidity | 50 | 43200 | > th | dose dependent | rect. | 20 | 8 |
| 651 | 225.37 | humidity | 80 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 658 | 225.38 | wind | 1 | 43200 | > th | dose independent | rect. | 9 | 6 |
| 667 | 225.39 | humidity | 80 | 43200 | < th | dose independent | sin | 16 | NA |
| 739 | 225.46 | humidity | 80 | 43200 | > th | dose independent | sin | 16 | NA |
| 790 | 225.50 | humidity | 70 | 43200 | > th | dose dependent | rect. | 13 | 19 |
| 807 | 225.52 | humidity | 80 | 43200 | > th | dose independent | sin | 4 | NA |
| 819 | 225.52 | humidity | 70 | 43200 | > th | dose dependent | rect. | 15 | 18 |
| 859 | 225.54 | humidity | 90 | 43200 | < th | dose dependent | rect. | 10 | 23 |
| 866 | 225.55 | wind | 1 | 43200 | < th | dose dependent | rect. | 4 | 11 |
| 899 | 225.59 | wind | 1 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 903 | 225.59 | humidity | 90 | 43200 | < th | dose dependent | no | NA | NA |
| 951 | 225.61 | wind | 1 | 43200 | < th | dose dependent | rect. | 4 | 20 |
| 979 | 225.63 | humidity | 90 | 43200 | < th | dose dependent | rect. | 22 | 23 |
| 1000 | 225.64 | humidity | 90 | 43200 | < th | dose dependent | rect. | 6 | 23 |