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Os01g0842600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to AAA-metalloprotease FtsH.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.46 (0.0237) R2 : 0.713
β1 : 1.36 (0.0888) R2dD : 0.17 R2D : 0.239
β2 : 0.652 (0.0605) R2dC : 0.0718 R2C : 0.047
β3 : -2.61 (0.122) R2dE : 0.343 R2E : 0.472
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.284 (0.0529) R2dN8 : 0.0287 R2N8 : 0.0461
σ : 0.436
deviance : 87.5
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C
peak time of C : 18.9
E
wheather : radiation
threshold : 2.428
memory length : 1442
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
83.49 0.429 9.38 1.76 0.63 -3.52 -1.07 -4.6 0.407 18.4 1.006 1436 -- --
84.81 0.429 9.46 1.37 0.637 -2.58 -1.09 -- 0.292 18.3 2.456 1434 -- --
86.15 0.432 9.39 1.77 0.632 -3.49 -- -4.43 0.408 18.7 1.07 1438 -- --
87.5 0.436 9.46 1.36 0.652 -2.61 -- -- 0.284 18.9 2.428 1442 -- --
105.79 0.479 9.38 1.72 -- -3.42 -- -4.24 0.376 -- 1.057 1422 -- --
172.46 0.616 9.37 1.89 0.601 -- -1.13 -- 0.677 18.5 -- -- -- --
175.34 0.62 9.37 1.9 0.598 -- -- -- 0.672 18.9 -- -- -- --
107.01 0.482 9.46 1.36 -- -2.56 -- -- 0.274 -- 2.382 1412 -- --
132.6 0.536 9.47 -- 0.648 -3.19 -- -- 0.117 18.9 1.963 1441 -- --
194.11 0.651 9.36 1.89 -- -- -- -- 0.661 -- -- -- -- --
270.85 0.77 9.42 -- 0.577 -- -- -- 0.46 19.1 -- -- -- --
150.65 0.572 9.48 -- -- -3.12 -- -- 0.0826 -- 1.953 1417 -- --
288.44 0.793 9.41 -- -- -- -- -- 0.451 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 79.58 radiation 1 1440 < th dose independent rect. 11 20
2 79.68 radiation 1 1440 > th dose independent rect. 11 20
8 80.04 radiation 1 1440 < th dose dependent rect. 9 22
38 82.89 radiation 1 1440 < th dose dependent rect. 5 22
39 82.90 radiation 1 1440 < th dose dependent rect. 5 20
45 82.97 radiation 1 1440 < th dose dependent rect. 5 14
53 83.55 radiation 1 1440 < th dose dependent rect. 2 23
54 83.55 radiation 1 1440 < th dose dependent rect. 11 23
59 83.57 radiation 1 1440 < th dose dependent rect. 21 22
61 83.58 radiation 1 1440 < th dose dependent no NA NA
63 83.58 radiation 1 1440 < th dose dependent rect. 24 23
64 83.59 radiation 1 1440 < th dose dependent rect. 2 21
80 83.62 radiation 1 1440 < th dose dependent rect. 2 18
81 83.62 radiation 1 1440 < th dose dependent rect. 24 19
102 83.73 radiation 1 1440 < th dose dependent rect. 17 23
113 84.16 radiation 1 1440 < th dose dependent sin 0 NA
123 84.56 radiation 1 1440 < th dose independent rect. 17 23
128 84.71 wind 7 43200 > th dose dependent rect. 15 1
132 84.79 radiation 1 1440 > th dose independent rect. 17 23
136 84.92 radiation 1 1440 < th dose independent rect. 5 22
137 84.93 radiation 1 1440 < th dose independent rect. 5 20
138 84.94 radiation 1 1440 < th dose independent rect. 5 18
143 84.97 radiation 1 1440 < th dose independent rect. 5 14
146 85.00 radiation 1 1440 > th dose independent rect. 5 14
164 85.13 radiation 1 1440 < th dose independent rect. 2 23
165 85.14 radiation 1 1440 < th dose independent rect. 21 23
166 85.15 radiation 1 1440 > th dose independent no NA NA
167 85.15 radiation 1 1440 < th dose independent no NA NA
198 85.15 radiation 1 1440 < th dose independent rect. 2 21
218 85.15 radiation 1 1440 < th dose independent rect. 24 23
227 85.17 radiation 1 1440 < th dose independent rect. 2 18
237 85.18 radiation 1 1440 < th dose independent rect. 24 19
263 85.59 radiation 1 1440 > th dose independent sin 13 NA
265 85.77 radiation 1 1440 < th dose independent sin 13 NA
269 86.10 radiation 1 1440 < th dose dependent sin 14 NA
290 86.86 wind 7 43200 > th dose dependent rect. 11 11
306 87.08 radiation 1 1440 < th dose dependent rect. 9 18
308 87.09 radiation 1 1440 < th dose dependent rect. 9 16
321 87.25 radiation 1 1440 < th dose dependent rect. 9 10
364 87.65 wind 7 43200 > th dose dependent rect. 14 4
373 87.71 radiation 1 1440 > th dose independent sin 23 NA
382 87.95 radiation 1 1440 < th dose independent sin 0 NA
384 88.04 wind 7 43200 > th dose dependent rect. 12 7
406 88.42 wind 7 43200 < th dose independent rect. 17 1
446 89.10 wind 7 43200 > th dose independent rect. 11 11
448 89.12 wind 9 43200 > th dose independent rect. 11 18
449 89.13 wind 9 43200 < th dose independent rect. 11 18
463 89.47 wind 7 43200 > th dose independent rect. 17 1
484 89.83 wind 7 43200 > th dose independent rect. 11 7
574 91.01 wind 5 43200 > th dose dependent rect. 11 3
597 91.48 wind 5 43200 > th dose dependent rect. 12 1
611 91.73 wind 7 43200 < th dose independent rect. 12 1
638 92.10 radiation 1 1440 > th dose independent rect. 11 8
662 92.20 wind 7 43200 < th dose independent rect. 10 5
680 92.26 wind 9 43200 > th dose independent rect. 14 9
720 92.47 wind 7 43200 > th dose independent rect. 12 1
723 92.49 temperature 25 14400 > th dose dependent rect. 17 1
737 92.57 radiation 1 14400 < th dose dependent rect. 2 3
751 92.61 wind 9 43200 > th dose independent rect. 14 7
754 92.63 radiation 1 14400 < th dose dependent rect. 4 1
768 92.73 wind 9 43200 < th dose independent rect. 14 7
795 92.92 radiation 1 1440 < th dose independent rect. 11 16
796 92.93 radiation 1 1440 < th dose independent rect. 11 14
806 93.03 radiation 1 1440 < th dose independent rect. 11 8
883 93.44 wind 9 43200 < th dose independent sin 18 NA
891 93.51 wind 9 43200 > th dose independent sin 17 NA
903 93.57 humidity 90 43200 > th dose dependent rect. 20 4
952 93.90 temperature 25 14400 > th dose independent rect. 17 19
953 93.92 temperature 25 14400 > th dose independent rect. 18 2
956 93.94 temperature 25 14400 > th dose independent rect. 17 12
958 93.95 wind 5 43200 < th dose independent rect. 20 1
963 94.02 temperature 25 14400 > th dose independent rect. 17 8
965 94.03 temperature 25 14400 > th dose independent rect. 17 10
975 94.08 temperature 25 14400 < th dose independent rect. 17 19
978 94.09 temperature 25 14400 < th dose independent rect. 17 12
979 94.10 temperature 25 14400 < th dose independent rect. 17 10
993 94.19 temperature 25 14400 < th dose independent rect. 18 2