Os01g0842200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Scarecrow-like 9 (Fragment).
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Os01g0842200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Scarecrow-like 9 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 67.21 | 0.385 | 12.5 | 1.49 | 1.23 | 1.08 | -0.769 | 0.299 | -0.239 | 6.85 | 20.7 | 17 | -- | -- |
| 67.25 | 0.382 | 12.5 | 1.5 | 1.23 | 1.04 | -0.734 | -- | -0.238 | 6.84 | 20.86 | 15 | -- | -- |
| 68.64 | 0.386 | 12.5 | 1.47 | 1.24 | 1 | -- | 0.188 | -0.235 | 6.89 | 20.9 | 13 | -- | -- |
| 68.67 | 0.386 | 12.5 | 1.48 | 1.23 | 0.962 | -- | -- | -0.234 | 6.88 | 20.9 | 13 | -- | -- |
| 116.88 | 0.504 | 12.5 | 1.78 | -- | 1.48 | -- | -0.864 | 0.0201 | -- | 30.14 | 427 | -- | -- |
| 74.74 | 0.405 | 12.5 | 1.33 | 1.24 | -- | -0.711 | -- | -0.313 | 6.59 | -- | -- | -- | -- |
| 76 | 0.408 | 12.5 | 1.32 | 1.24 | -- | -- | -- | -0.311 | 6.62 | -- | -- | -- | -- |
| 117.6 | 0.505 | 12.5 | 1.71 | -- | 1.49 | -- | -- | 0.0036 | -- | 29.9 | 413 | -- | -- |
| 121.69 | 0.517 | 12.6 | -- | 1.25 | 0.208 | -- | -- | -0.445 | 6.62 | 20.9 | 13 | -- | -- |
| 155.54 | 0.583 | 12.6 | 1.35 | -- | -- | -- | -- | -0.286 | -- | -- | -- | -- | -- |
| 122.07 | 0.517 | 12.6 | -- | 1.25 | -- | -- | -- | -0.458 | 6.56 | -- | -- | -- | -- |
| 188.28 | 0.639 | 12.6 | -- | -- | 0.914 | -- | -- | -0.292 | -- | 30.2 | 392 | -- | -- |
| 203.72 | 0.666 | 12.6 | -- | -- | -- | -- | -- | -0.436 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 65.38 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 2 |
| 2 | 65.42 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 2 | 2 |
| 3 | 65.49 | temperature | 25.0 | 10 | < th | dose dependent | sin | 16 | NA |
| 9 | 65.92 | temperature | 20.0 | 30 | > th | dose independent | rect. | 18 | 23 |
| 16 | 66.22 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 15 | 12 |
| 44 | 66.64 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 11 | 16 |
| 46 | 66.76 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 23 | 5 |
| 52 | 66.85 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 23 | 5 |
| 59 | 66.90 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 12 | 15 |
| 81 | 67.05 | temperature | 20.0 | 90 | < th | dose independent | rect. | 11 | 19 |
| 93 | 67.12 | temperature | 20.0 | 90 | < th | dose independent | rect. | 15 | 15 |
| 165 | 67.40 | temperature | 20.0 | 90 | < th | dose independent | sin | 13 | NA |
| 175 | 67.43 | temperature | 20.0 | 270 | > th | dose independent | rect. | 18 | 12 |
| 192 | 67.46 | temperature | 20.0 | 90 | < th | dose independent | rect. | 15 | 20 |
| 200 | 67.47 | temperature | 20.0 | 90 | > th | dose independent | sin | 13 | NA |
| 233 | 67.54 | temperature | 20.0 | 90 | > th | dose independent | rect. | 20 | 23 |
| 252 | 67.57 | temperature | 20.0 | 10 | < th | dose independent | rect. | 15 | 21 |
| 263 | 67.58 | temperature | 20.0 | 90 | > th | dose independent | rect. | 11 | 23 |
| 267 | 67.58 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 14 | 21 |
| 312 | 67.65 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 15 | 21 |
| 369 | 67.74 | temperature | 20.0 | 90 | > th | dose independent | rect. | 7 | 23 |
| 370 | 67.74 | temperature | 20.0 | 90 | < th | dose independent | rect. | 21 | 23 |
| 392 | 67.76 | humidity | 70.0 | 14400 | > th | dose dependent | rect. | 4 | 2 |
| 399 | 67.77 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 4 | 2 |
| 424 | 67.80 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 431 | 67.81 | temperature | 20.0 | 90 | < th | dose independent | no | NA | NA |
| 445 | 67.82 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 448 | 67.83 | temperature | 20.0 | 10 | < th | dose dependent | no | NA | NA |
| 478 | 67.84 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 492 | 67.85 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 509 | 67.86 | temperature | 20.0 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 524 | 67.87 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 541 | 67.89 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 14 | 4 |
| 549 | 67.89 | temperature | 20.0 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 556 | 67.90 | temperature | 20.0 | 90 | < th | dose independent | rect. | 5 | 23 |
| 562 | 67.91 | temperature | 20.0 | 90 | > th | dose independent | no | NA | NA |
| 575 | 67.92 | temperature | 20.0 | 90 | > th | dose independent | rect. | 20 | 10 |
| 579 | 67.92 | temperature | 20.0 | 30 | < th | dose dependent | sin | 8 | NA |
| 581 | 67.92 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 8 | 13 |
| 587 | 67.93 | humidity | 70.0 | 14400 | > th | dose dependent | rect. | 1 | 6 |
| 588 | 67.93 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 11 | 9 |
| 601 | 67.94 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 9 | 11 |
| 621 | 67.95 | temperature | 20.0 | 90 | < th | dose independent | rect. | 3 | 23 |
| 641 | 67.96 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 1 | 6 |
| 686 | 67.99 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 6 | 21 |
| 694 | 68.00 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 17 | 1 |
| 750 | 68.04 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 14 | 6 |
| 762 | 68.05 | temperature | 20.0 | 90 | < th | dose independent | rect. | 1 | 23 |
| 787 | 68.07 | wind | 3.0 | 14400 | > th | dose independent | rect. | 1 | 2 |
| 807 | 68.08 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 4 | 9 |
| 835 | 68.10 | temperature | 20.0 | 10 | > th | dose independent | rect. | 21 | 20 |
| 942 | 68.17 | temperature | 20.0 | 10 | < th | dose independent | rect. | 11 | 19 |
| 984 | 68.19 | temperature | 20.0 | 90 | > th | dose independent | rect. | 20 | 13 |