Os01g0840100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Heat shock protein Hsp70 family protein.
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Os01g0840100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Heat shock protein Hsp70 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 243.12 | 0.733 | 12.3 | 2.52 | 1.58 | -2.78 | 0.278 | -1.35 | 0.97 | 7.02 | 6.72 | 89 | -- | -- |
| 251.75 | 0.739 | 12.3 | 2.49 | 1.62 | -2.68 | 0.999 | -- | 0.986 | 7.4 | 6.215 | 95 | -- | -- |
| 243.29 | 0.726 | 12.3 | 2.53 | 1.59 | -2.76 | -- | -1.4 | 0.97 | 7.06 | 6.58 | 89 | -- | -- |
| 253.75 | 0.742 | 12.3 | 2.52 | 1.62 | -2.89 | -- | -- | 0.966 | 6.7 | 6.248 | 97 | -- | -- |
| 314.94 | 0.831 | 12.3 | 2.55 | -- | -3.01 | -- | -1.27 | 1.08 | -- | 7.986 | 23 | -- | -- |
| 358.02 | 0.887 | 12.2 | 2.5 | 3.72 | -- | 1.42 | -- | 1.15 | 10.9 | -- | -- | -- | -- |
| 366.48 | 0.896 | 12.2 | 2.56 | 3.72 | -- | -- | -- | 1.15 | 10.9 | -- | -- | -- | -- |
| 324.48 | 0.843 | 12.3 | 2.56 | -- | -3.01 | -- | -- | 1.07 | -- | 7.416 | 23 | -- | -- |
| 418.33 | 0.953 | 12.4 | -- | 1.74 | -3.01 | -- | -- | 0.691 | 6.26 | 5.17 | 105 | -- | -- |
| 1225.06 | 1.64 | 12.3 | 2.48 | -- | -- | -- | -- | 1.13 | -- | -- | -- | -- | -- |
| 538.67 | 1.09 | 12.3 | -- | 3.7 | -- | -- | -- | 0.868 | 10.9 | -- | -- | -- | -- |
| 490.7 | 1.03 | 12.4 | -- | -- | -3 | -- | -- | 0.755 | -- | 7.114 | 6 | -- | -- |
| 1386.7 | 1.74 | 12.4 | -- | -- | -- | -- | -- | 0.852 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 247.05 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 20 |
| 3 | 248.15 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 18 |
| 8 | 250.46 | radiation | 10 | 90 | < th | dose dependent | rect. | 7 | 23 |
| 12 | 252.03 | radiation | 10 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 13 | 252.25 | radiation | 10 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 14 | 252.53 | radiation | 10 | 90 | < th | dose dependent | no | NA | NA |
| 16 | 252.98 | temperature | 15 | 30 | > th | dose dependent | rect. | 6 | 12 |
| 18 | 253.11 | radiation | 10 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 22 | 254.47 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 14 |
| 71 | 259.28 | temperature | 15 | 10 | > th | dose dependent | sin | 2 | NA |
| 112 | 261.76 | temperature | 30 | 10 | < th | dose dependent | sin | 3 | NA |
| 155 | 264.32 | temperature | 20 | 10 | > th | dose dependent | rect. | 20 | 23 |
| 193 | 266.29 | radiation | 10 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 197 | 266.59 | humidity | 90 | 30 | < th | dose independent | rect. | 6 | 12 |
| 241 | 269.19 | radiation | 10 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 287 | 271.35 | radiation | 10 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 350 | 274.31 | radiation | 1 | 90 | > th | dose independent | rect. | 5 | 13 |
| 380 | 275.37 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 416 | 276.26 | radiation | 1 | 90 | > th | dose independent | no | NA | NA |
| 463 | 276.38 | temperature | 25 | 10 | > th | dose independent | rect. | 5 | 13 |
| 465 | 276.45 | radiation | 1 | 90 | < th | dose independent | no | NA | NA |
| 466 | 276.46 | radiation | 1 | 90 | < th | dose independent | rect. | 15 | 23 |
| 468 | 276.47 | radiation | 1 | 90 | < th | dose independent | rect. | 9 | 23 |
| 469 | 276.48 | temperature | 20 | 10 | > th | dose dependent | no | NA | NA |
| 480 | 276.71 | radiation | 1 | 90 | < th | dose independent | rect. | 12 | 23 |
| 503 | 277.44 | radiation | 1 | 90 | < th | dose independent | rect. | 17 | 23 |
| 511 | 277.62 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 557 | 278.70 | temperature | 25 | 10 | < th | dose independent | rect. | 3 | 17 |
| 558 | 278.71 | temperature | 15 | 720 | > th | dose dependent | rect. | 6 | 1 |
| 660 | 280.65 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 681 | 281.25 | radiation | 1 | 90 | > th | dose independent | sin | 1 | NA |
| 688 | 281.36 | radiation | 1 | 90 | < th | dose independent | sin | 1 | NA |
| 723 | 281.99 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 807 | 283.37 | temperature | 10 | 720 | > th | dose dependent | rect. | 5 | 3 |
| 821 | 283.59 | radiation | 1 | 90 | < th | dose independent | rect. | 21 | 23 |
| 826 | 283.68 | radiation | 1 | 90 | < th | dose dependent | sin | 1 | NA |
| 863 | 284.42 | radiation | 1 | 90 | > th | dose independent | rect. | 15 | 23 |
| 866 | 284.46 | radiation | 1 | 90 | < th | dose independent | rect. | 23 | 23 |
| 877 | 284.71 | radiation | 1 | 90 | < th | dose independent | rect. | 1 | 23 |
| 916 | 285.29 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 917 | 285.29 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 935 | 285.62 | temperature | 25 | 10 | < th | dose independent | rect. | 3 | 15 |
| 977 | 286.42 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |