Os01g0839400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os01g0839400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 90.27 | 0.446 | 2.87 | 1.19 | 0.323 | -1.25 | 0.416 | 17.7 | 0.0976 | 20.4 | 30.6 | 342 | -- | -- |
| 96.99 | 0.462 | 2.99 | 0.223 | 0.434 | 0.643 | 0.668 | -- | 0.0759 | 20 | 30.6 | 342 | -- | -- |
| 90.7 | 0.444 | 2.86 | 1.21 | 0.314 | -1.27 | -- | 18.2 | 0.0995 | 20.3 | 30.8 | 361 | -- | -- |
| 93.55 | 0.45 | 2.98 | 0.168 | 0.306 | 0.703 | -- | -- | 0.11 | 20.4 | 29.68 | 359 | -- | -- |
| 95.51 | 0.455 | 2.85 | 1.24 | -- | -1.12 | -- | 18.2 | 0.109 | -- | 30.8 | 397 | -- | -- |
| 100.03 | 0.469 | 3 | 0.253 | 0.463 | -- | 0.752 | -- | 0.0558 | 19.5 | -- | -- | -- | -- |
| 101.59 | 0.472 | 3 | 0.236 | 0.463 | -- | -- | -- | 0.057 | 19.5 | -- | -- | -- | -- |
| 97.6 | 0.46 | 2.98 | 0.136 | -- | 0.803 | -- | -- | 0.0725 | -- | 28.02 | 404 | -- | -- |
| 94.16 | 0.452 | 2.98 | -- | 0.299 | 0.713 | -- | -- | 0.0784 | 20.6 | 29.16 | 360 | -- | -- |
| 113.05 | 0.497 | 2.98 | 0.229 | -- | -- | -- | -- | 0.0497 | -- | -- | -- | -- | -- |
| 103.06 | 0.475 | 3 | -- | 0.461 | -- | -- | -- | 0.0307 | 19.5 | -- | -- | -- | -- |
| 98.08 | 0.461 | 2.98 | -- | -- | 0.817 | -- | -- | 0.0565 | -- | 27.95 | 409 | -- | -- |
| 114.44 | 0.499 | 2.99 | -- | -- | -- | -- | -- | 0.0243 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 86.72 | wind | 1.0 | 10 | > th | dose independent | rect. | 4 | 1 |
| 3 | 88.95 | wind | 1.0 | 10 | > th | dose dependent | rect. | 4 | 1 |
| 5 | 89.47 | temperature | 25.0 | 30 | > th | dose independent | rect. | 4 | 1 |
| 8 | 89.61 | humidity | 90.0 | 10 | < th | dose independent | rect. | 4 | 1 |
| 10 | 89.66 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 4 | 1 |
| 13 | 90.70 | temperature | 30.0 | 270 | > th | dose dependent | rect. | 12 | 7 |
| 44 | 90.76 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 5 | 23 |
| 45 | 90.76 | temperature | 30.0 | 270 | > th | dose dependent | sin | 18 | NA |
| 70 | 90.92 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 4 | 1 |
| 71 | 90.92 | temperature | 30.0 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 75 | 91.01 | temperature | 15.0 | 10 | > th | dose independent | rect. | 5 | 23 |
| 76 | 91.01 | temperature | 30.0 | 270 | > th | dose dependent | no | NA | NA |
| 202 | 91.24 | atmosphere | 1010.0 | 90 | < th | dose dependent | rect. | 13 | 7 |
| 245 | 91.65 | atmosphere | 1010.0 | 10 | < th | dose dependent | rect. | 14 | 7 |
| 253 | 91.82 | atmosphere | 1010.0 | 10 | < th | dose independent | rect. | 20 | 8 |
| 273 | 92.16 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 4 | 17 |
| 276 | 92.23 | temperature | 30.0 | 270 | < th | dose independent | rect. | 5 | 20 |
| 284 | 92.27 | temperature | 30.0 | 270 | > th | dose independent | rect. | 16 | 22 |
| 316 | 92.40 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 20 | 7 |
| 320 | 92.42 | temperature | 30.0 | 270 | < th | dose independent | rect. | 10 | 14 |
| 321 | 92.43 | temperature | 30.0 | 270 | < th | dose independent | rect. | 18 | 23 |
| 325 | 92.46 | temperature | 30.0 | 270 | > th | dose independent | rect. | 10 | 9 |
| 340 | 92.47 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 5 | 23 |
| 343 | 92.47 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 346 | 92.49 | temperature | 30.0 | 720 | > th | dose independent | rect. | 18 | 19 |
| 349 | 92.51 | temperature | 30.0 | 720 | > th | dose independent | rect. | 8 | 5 |
| 364 | 92.53 | temperature | 30.0 | 720 | < th | dose independent | rect. | 5 | 7 |
| 365 | 92.54 | atmosphere | 1005.0 | 10 | > th | dose independent | rect. | 4 | 1 |
| 369 | 92.56 | temperature | 30.0 | 270 | > th | dose dependent | rect. | 15 | 1 |
| 388 | 92.61 | wind | 3.0 | 10 | < th | dose independent | rect. | 4 | 1 |
| 393 | 92.62 | temperature | 30.0 | 720 | > th | dose independent | rect. | 8 | 3 |
| 409 | 92.63 | temperature | 10.0 | 10 | > th | dose independent | rect. | 4 | 1 |
| 411 | 92.63 | temperature | 30.0 | 10 | < th | dose independent | rect. | 4 | 1 |
| 412 | 92.63 | humidity | 50.0 | 10 | > th | dose independent | rect. | 4 | 1 |
| 416 | 92.63 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 4 | 1 |
| 418 | 92.63 | atmosphere | 1010.0 | 10 | < th | dose independent | rect. | 4 | 1 |
| 420 | 92.63 | radiation | 1.0 | 10 | < th | dose independent | rect. | 4 | 1 |
| 425 | 92.63 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 4 | 1 |
| 429 | 92.63 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 4 | 1 |
| 433 | 92.63 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 4 | 1 |
| 434 | 92.64 | temperature | 30.0 | 720 | > th | dose independent | sin | 8 | NA |
| 461 | 92.69 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 13 | 7 |
| 462 | 92.69 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 3 | 17 |
| 463 | 92.70 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 4 | 1 |
| 515 | 92.74 | temperature | 30.0 | 90 | < th | dose independent | rect. | 20 | 23 |
| 521 | 92.78 | temperature | 30.0 | 720 | < th | dose independent | rect. | 20 | 16 |
| 525 | 92.80 | temperature | 30.0 | 270 | > th | dose independent | sin | 21 | NA |
| 534 | 92.83 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 4 | 1 |
| 543 | 92.86 | temperature | 30.0 | 270 | > th | dose independent | no | NA | NA |
| 639 | 92.88 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 20 | 6 |
| 647 | 92.90 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 13 | 8 |
| 652 | 92.93 | wind | 1.0 | 10 | > th | dose independent | rect. | 4 | 16 |
| 657 | 92.94 | wind | 9.0 | 10 | < th | dose dependent | rect. | 4 | 1 |
| 678 | 93.00 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 21 | 7 |
| 698 | 93.06 | temperature | 30.0 | 270 | < th | dose independent | sin | 21 | NA |
| 708 | 93.07 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 4 | 1 |
| 709 | 93.08 | temperature | 30.0 | 270 | < th | dose independent | no | NA | NA |
| 713 | 93.09 | temperature | 30.0 | 720 | > th | dose dependent | rect. | 18 | 19 |
| 744 | 93.14 | wind | 3.0 | 1440 | < th | dose dependent | rect. | 2 | 2 |
| 748 | 93.15 | temperature | 30.0 | 720 | > th | dose dependent | sin | 8 | NA |
| 754 | 93.17 | temperature | 30.0 | 720 | > th | dose dependent | rect. | 8 | 5 |
| 777 | 93.20 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 2 | 19 |
| 811 | 93.22 | atmosphere | 1000.0 | 270 | < th | dose dependent | rect. | 15 | 1 |
| 901 | 93.29 | temperature | 30.0 | 270 | < th | dose independent | rect. | 5 | 11 |
| 904 | 93.30 | temperature | 15.0 | 10 | > th | dose independent | rect. | 20 | 8 |
| 931 | 93.37 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 21 | 5 |
| 967 | 93.40 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 4 | 1 |
| 974 | 93.41 | temperature | 30.0 | 720 | < th | dose independent | sin | 9 | NA |
| 977 | 93.41 | temperature | 30.0 | 270 | < th | dose independent | rect. | 10 | 23 |
| 981 | 93.42 | atmosphere | 1010.0 | 270 | < th | dose dependent | rect. | 15 | 2 |