Os01g0839100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0839100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 189.72 | 0.647 | 4.35 | -1.97 | 0.439 | 1.21 | 0.59 | 0.742 | -0.368 | 14.8 | 24.31 | 248 | -- | -- |
| 190.22 | 0.642 | 4.33 | -1.84 | 0.433 | 1.14 | 0.275 | -- | -0.334 | 14.5 | 24.3 | 217 | -- | -- |
| 190.2 | 0.642 | 4.34 | -1.9 | 0.449 | 1.18 | -- | 0.371 | -0.36 | 14 | 24.2 | 210 | -- | -- |
| 190.37 | 0.643 | 4.33 | -1.85 | 0.45 | 1.14 | -- | -- | -0.346 | 14 | 24.3 | 207 | -- | -- |
| 200.94 | 0.66 | 4.34 | -1.92 | -- | 1.06 | -- | 0.297 | -0.374 | -- | 24.2 | 319 | -- | -- |
| 208.22 | 0.676 | 4.38 | -2.14 | 0.308 | -- | 0.349 | -- | -0.547 | 14.4 | -- | -- | -- | -- |
| 208.4 | 0.676 | 4.38 | -2.13 | 0.31 | -- | -- | -- | -0.546 | 13.6 | -- | -- | -- | -- |
| 201.07 | 0.66 | 4.34 | -1.9 | -- | 1 | -- | -- | -0.386 | -- | 24.2 | 297 | -- | -- |
| 271.02 | 0.767 | 4.26 | -- | 0.557 | 1.9 | -- | -- | -0.029 | 14.3 | 24.3 | 218 | -- | -- |
| 214.29 | 0.684 | 4.38 | -2.15 | -- | -- | -- | -- | -0.553 | -- | -- | -- | -- | -- |
| 328.49 | 0.848 | 4.32 | -- | 0.349 | -- | -- | -- | -0.308 | 13.8 | -- | -- | -- | -- |
| 200.38 | 0.659 | 4.21 | -- | -- | 1.89 | -- | -- | 0.207 | -- | 24.87 | 47520 | -- | -- |
| 335.89 | 0.855 | 4.33 | -- | -- | -- | -- | -- | -0.315 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 182.90 | wind | 1 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 5 | 184.53 | wind | 1 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 6 | 184.88 | humidity | 50 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 7 | 184.95 | radiation | 40 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 8 | 184.97 | radiation | 40 | 14400 | > th | dose dependent | rect. | 15 | 18 |
| 26 | 185.27 | wind | 1 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 28 | 185.34 | wind | 1 | 14400 | > th | dose independent | rect. | 21 | 6 |
| 31 | 185.44 | temperature | 25 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 33 | 185.50 | radiation | 1 | 720 | > th | dose dependent | rect. | 18 | 11 |
| 36 | 185.58 | wind | 1 | 14400 | < th | dose dependent | rect. | 17 | 15 |
| 39 | 185.64 | wind | 1 | 14400 | < th | dose dependent | rect. | 20 | 12 |
| 40 | 185.64 | humidity | 50 | 43200 | < th | dose dependent | rect. | 19 | 20 |
| 45 | 185.68 | humidity | 50 | 43200 | < th | dose dependent | rect. | 6 | 9 |
| 69 | 185.76 | humidity | 50 | 43200 | < th | dose independent | rect. | 19 | 19 |
| 71 | 185.77 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 83 | 185.80 | radiation | 20 | 14400 | > th | dose independent | rect. | 17 | 14 |
| 85 | 185.81 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 87 | 185.82 | humidity | 50 | 43200 | < th | dose independent | rect. | 7 | 7 |
| 93 | 185.84 | humidity | 50 | 43200 | > th | dose independent | rect. | 19 | 21 |
| 97 | 185.86 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 110 | 185.90 | humidity | 50 | 43200 | > th | dose independent | rect. | 19 | 18 |
| 122 | 185.96 | humidity | 50 | 43200 | > th | dose independent | rect. | 6 | 10 |
| 132 | 185.96 | humidity | 50 | 43200 | < th | dose dependent | rect. | 12 | 10 |
| 138 | 185.96 | humidity | 50 | 43200 | < th | dose dependent | rect. | 12 | 20 |
| 166 | 186.01 | humidity | 50 | 43200 | > th | dose independent | rect. | 10 | 6 |
| 170 | 186.02 | humidity | 50 | 43200 | > th | dose independent | rect. | 11 | 2 |
| 188 | 186.03 | humidity | 50 | 43200 | > th | dose independent | rect. | 23 | 17 |
| 212 | 186.08 | humidity | 50 | 43200 | < th | dose independent | sin | 6 | NA |
| 214 | 186.08 | humidity | 50 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 242 | 186.14 | humidity | 50 | 43200 | > th | dose independent | sin | 6 | NA |
| 245 | 186.14 | wind | 1 | 14400 | < th | dose independent | rect. | 20 | 7 |
| 268 | 186.16 | radiation | 20 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 282 | 186.16 | humidity | 50 | 43200 | < th | dose dependent | sin | 1 | NA |
| 303 | 186.18 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 15 | 9 |
| 371 | 186.27 | humidity | 70 | 720 | < th | dose independent | rect. | 19 | 12 |
| 388 | 186.30 | wind | 1 | 14400 | > th | dose independent | rect. | 10 | 22 |
| 398 | 186.32 | humidity | 50 | 43200 | < th | dose dependent | rect. | 6 | 16 |
| 448 | 186.35 | temperature | 20 | 720 | > th | dose dependent | rect. | 17 | 11 |
| 460 | 186.36 | humidity | 50 | 43200 | < th | dose dependent | no | NA | NA |
| 526 | 186.42 | temperature | 25 | 270 | < th | dose dependent | rect. | 21 | 18 |
| 539 | 186.47 | wind | 1 | 14400 | > th | dose independent | rect. | 15 | 17 |
| 543 | 186.48 | humidity | 90 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 546 | 186.49 | humidity | 70 | 720 | < th | dose independent | rect. | 19 | 1 |
| 561 | 186.50 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 15 | 9 |
| 580 | 186.56 | wind | 1 | 14400 | < th | dose independent | rect. | 10 | 22 |
| 587 | 186.58 | wind | 1 | 14400 | < th | dose dependent | rect. | 20 | 7 |
| 588 | 186.59 | wind | 1 | 14400 | > th | dose independent | rect. | 4 | 23 |
| 611 | 186.66 | wind | 1 | 14400 | < th | dose dependent | sin | 11 | NA |
| 616 | 186.68 | humidity | 70 | 720 | > th | dose independent | rect. | 19 | 8 |
| 633 | 186.72 | humidity | 80 | 43200 | > th | dose independent | rect. | 16 | 7 |
| 657 | 186.78 | wind | 1 | 14400 | < th | dose independent | rect. | 15 | 17 |
| 669 | 186.84 | humidity | 80 | 43200 | < th | dose independent | rect. | 16 | 7 |
| 670 | 186.84 | humidity | 50 | 43200 | < th | dose independent | rect. | 11 | 11 |
| 677 | 186.85 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 680 | 186.86 | humidity | 70 | 720 | < th | dose dependent | rect. | 19 | 12 |
| 696 | 186.88 | humidity | 50 | 43200 | < th | dose independent | rect. | 11 | 22 |
| 705 | 186.90 | humidity | 50 | 43200 | < th | dose independent | rect. | 6 | 16 |
| 729 | 186.91 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 6 |
| 730 | 186.92 | humidity | 60 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 739 | 186.92 | wind | 1 | 14400 | < th | dose independent | rect. | 4 | 23 |
| 740 | 186.92 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 757 | 186.93 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 18 | 4 |
| 769 | 186.94 | wind | 1 | 14400 | < th | dose dependent | rect. | 10 | 22 |
| 800 | 186.96 | humidity | 70 | 720 | < th | dose dependent | rect. | 19 | 1 |
| 826 | 186.98 | humidity | 50 | 43200 | < th | dose independent | no | NA | NA |
| 880 | 187.02 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 965 | 187.11 | humidity | 60 | 43200 | < th | dose dependent | rect. | 8 | 2 |