Os01g0838400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os01g0838400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 100.31 | 0.471 | 8.5 | -0.706 | 0.495 | -1.55 | 1.84 | -2.94 | -0.107 | 2.98 | 27.29 | 3 | -- | -- |
| 110.6 | 0.494 | 8.55 | -1.2 | 0.443 | -1.38 | 0.773 | -- | -0.216 | 3.44 | 27.29 | 3 | -- | -- |
| 108.19 | 0.484 | 8.53 | -0.947 | 0.44 | -1.45 | -- | -1.62 | -0.161 | 3.31 | 26.7 | 2 | -- | -- |
| 112.42 | 0.497 | 8.55 | -1.22 | 0.468 | -1.39 | -- | -- | -0.215 | 3.34 | 27.85 | 2 | -- | -- |
| 115.27 | 0.5 | 8.51 | -0.885 | -- | -1.19 | -- | -1.54 | -0.0887 | -- | 25.6 | 2 | -- | -- |
| 139.38 | 0.553 | 8.49 | -0.89 | 0.121 | -- | 0.681 | -- | 0.0832 | 5.42 | -- | -- | -- | -- |
| 139.99 | 0.554 | 8.48 | -0.886 | 0.158 | -- | -- | -- | 0.081 | 7.8 | -- | -- | -- | -- |
| 119.37 | 0.511 | 8.54 | -1.13 | -- | -1.1 | -- | -- | -0.143 | -- | 25.6 | 2 | -- | -- |
| 147.51 | 0.569 | 8.5 | -- | 0.276 | -0.899 | -- | -- | 0.00534 | 4.07 | 26.7 | 2 | -- | -- |
| 141.34 | 0.556 | 8.49 | -0.884 | -- | -- | -- | -- | 0.0832 | -- | -- | -- | -- | -- |
| 160.67 | 0.593 | 8.46 | -- | 0.153 | -- | -- | -- | 0.18 | 8.21 | -- | -- | -- | -- |
| 150.67 | 0.574 | 8.5 | -- | -- | -0.755 | -- | -- | 0.0432 | -- | 25.78 | 2 | -- | -- |
| 161.95 | 0.594 | 8.47 | -- | -- | -- | -- | -- | 0.181 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 100.05 | temperature | 30 | 270 | < th | dose dependent | rect. | 10 | 21 |
| 2 | 100.16 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 19 |
| 3 | 100.28 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 5 | 100.78 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 21 |
| 22 | 102.01 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 30 | 102.36 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 47 | 103.22 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 51 | 103.42 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 52 | 103.46 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 57 | 103.64 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 63 | 103.85 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 83 | 104.34 | temperature | 25 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 89 | 104.37 | temperature | 25 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 107 | 104.58 | temperature | 25 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 131 | 105.07 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 14 |
| 150 | 105.37 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 12 |
| 162 | 105.51 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 165 | 105.55 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 4 |
| 200 | 105.87 | temperature | 30 | 720 | < th | dose dependent | sin | 19 | NA |
| 226 | 106.13 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 4 |
| 273 | 106.47 | temperature | 20 | 720 | > th | dose dependent | rect. | 13 | 19 |
| 296 | 106.65 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 338 | 106.99 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 354 | 107.06 | temperature | 15 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 420 | 107.35 | temperature | 25 | 720 | < th | dose independent | rect. | 9 | 14 |
| 435 | 107.40 | temperature | 25 | 720 | < th | dose independent | sin | 19 | NA |
| 437 | 107.40 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 465 | 107.54 | temperature | 10 | 720 | > th | dose dependent | rect. | 7 | 18 |
| 469 | 107.56 | temperature | 20 | 1440 | > th | dose dependent | sin | 15 | NA |
| 484 | 107.59 | temperature | 10 | 720 | > th | dose dependent | sin | 17 | NA |
| 492 | 107.62 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 505 | 107.67 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 592 | 107.93 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 19 |
| 642 | 108.06 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 19 |
| 660 | 108.12 | temperature | 25 | 720 | > th | dose independent | rect. | 7 | 18 |
| 674 | 108.16 | temperature | 25 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 740 | 108.31 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 20 |
| 838 | 108.54 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 881 | 108.67 | temperature | 25 | 720 | > th | dose independent | sin | 19 | NA |
| 897 | 108.71 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 937 | 108.83 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 940 | 108.84 | temperature | 10 | 720 | > th | dose dependent | rect. | 9 | 16 |
| 955 | 108.88 | temperature | 25 | 720 | < th | dose independent | rect. | 13 | 9 |
| 975 | 108.92 | temperature | 20 | 1440 | > th | dose dependent | rect. | 2 | 23 |
| 989 | 108.95 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 23 |