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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0838200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.34 (0.0409) R2 : 0.277
β1 : -0.787 (0.155) R2dD : 0.0476 R2D : 0.1
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.79 (0.183) R2dE : 0.197 R2E : 0.198
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.27 (0.0943) R2dN8 : 0.0211 R2N8 : -0.0144
σ : 0.747
deviance : 256.94
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 27.22
memory length : 787
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
250.91 0.744 3.33 -0.7 0.143 1.67 -0.999 -0.378 0.266 10.3 27.16 793 -- --
250.99 0.738 3.34 -0.768 0.143 1.69 -1.09 -- 0.249 10.1 27.12 826 -- --
254.18 0.743 3.31 -0.595 0.141 1.63 -- -1.19 0.278 11.1 27.87 810 -- --
254.61 0.743 3.35 -0.838 0.275 1.68 -- -- 0.237 13.5 26.75 586 -- --
255.3 0.744 3.31 -0.571 -- 1.75 -- -1.21 0.31 -- 28.37 809 -- --
292.45 0.802 3.41 -1.25 0.461 -- -1.08 -- -0.123 10.4 -- -- -- --
297.17 0.807 3.41 -1.29 0.466 -- -- -- -0.125 10.6 -- -- -- --
256.94 0.747 3.34 -0.787 -- 1.79 -- -- 0.27 -- 27.22 787 -- --
270.23 0.766 3.3 -- 0.286 2.06 -- -- 0.408 14.8 27.25 601 -- --
310.5 0.823 3.43 -1.3 -- -- -- -- -0.127 -- -- -- -- --
341.35 0.864 3.38 -- 0.475 -- -- -- 0.0191 10.8 -- -- -- --
271.11 0.767 3.3 -- -- 2.12 -- -- 0.417 -- 27.23 833 -- --
355.3 0.88 3.39 -- -- -- -- -- 0.0173 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 244.36 temperature 30 270 < th dose dependent rect. 17 19
14 246.96 temperature 10 720 > th dose dependent rect. 19 15
32 247.85 temperature 10 1440 > th dose dependent rect. 2 7
35 247.93 temperature 30 1440 < th dose dependent rect. 2 7
42 247.97 temperature 10 720 > th dose dependent rect. 19 20
51 248.11 temperature 20 1440 > th dose dependent rect. 22 11
60 248.22 temperature 25 1440 < th dose dependent rect. 3 2
65 248.27 temperature 20 1440 > th dose dependent rect. 5 2
110 248.66 temperature 10 720 > th dose dependent sin 10 NA
161 248.94 temperature 20 1440 > th dose dependent rect. 22 1
162 248.95 temperature 30 720 < th dose dependent sin 10 NA
171 248.98 temperature 10 270 > th dose dependent rect. 11 23
201 249.13 humidity 90 14400 > th dose dependent rect. 22 2
221 249.22 temperature 10 270 > th dose dependent rect. 24 23
347 249.89 temperature 30 720 < th dose dependent rect. 22 21
363 249.96 humidity 90 14400 > th dose dependent rect. 21 4
415 250.16 temperature 30 1440 < th dose dependent sin 7 NA
509 250.46 temperature 10 1440 > th dose dependent rect. 8 1
570 250.64 temperature 30 1440 < th dose dependent rect. 8 1
731 251.12 temperature 30 270 < th dose dependent rect. 4 23
776 251.29 humidity 90 14400 > th dose dependent rect. 18 11
861 251.58 temperature 30 720 < th dose dependent no NA NA
895 251.64 temperature 30 720 < th dose dependent rect. 7 23
907 251.69 temperature 15 10 > th dose dependent rect. 13 23