Os01g0838000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os01g0838000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 185.62 | 0.64 | 5.08 | -0.0144 | 0.585 | -2.89 | 0.299 | -2.22 | 1.61 | 15 | 14.72 | 406 | -- | -- |
| 188.98 | 0.64 | 5.03 | 0.352 | 0.567 | -2.95 | 0.0163 | -- | 1.7 | 14.9 | 12.35 | 410 | -- | -- |
| 185.71 | 0.635 | 5.07 | 0.0176 | 0.584 | -2.71 | -- | -1.8 | 1.62 | 14.9 | 16.1 | 410 | -- | -- |
| 187.81 | 0.638 | 5.03 | 0.332 | 0.559 | -2.61 | -- | -- | 1.71 | 14.9 | 17.08 | 424 | -- | -- |
| 189.2 | 0.641 | 5.09 | 0.0211 | -- | -2.41 | -- | -1.62 | 1.59 | -- | 16.3 | 690 | -- | -- |
| 285.31 | 0.792 | 5.11 | -0.31 | 0.588 | -- | 0.399 | -- | 1.27 | 8.72 | -- | -- | -- | -- |
| 285.83 | 0.792 | 5.11 | -0.297 | 0.585 | -- | -- | -- | 1.27 | 8.81 | -- | -- | -- | -- |
| 191.84 | 0.645 | 5.03 | 0.346 | -- | -2.41 | -- | -- | 1.68 | -- | 16.94 | 690 | -- | -- |
| 189.83 | 0.642 | 5.04 | -- | 0.584 | -2.34 | -- | -- | 1.65 | 14.9 | 18.84 | 406 | -- | -- |
| 305.3 | 0.816 | 5.13 | -0.296 | -- | -- | -- | -- | 1.28 | -- | -- | -- | -- | -- |
| 288.15 | 0.794 | 5.1 | -- | 0.585 | -- | -- | -- | 1.3 | 8.84 | -- | -- | -- | -- |
| 194.65 | 0.65 | 5.05 | -- | -- | -2.29 | -- | -- | 1.62 | -- | 17.1 | 666 | -- | -- |
| 307.62 | 0.819 | 5.12 | -- | -- | -- | -- | -- | 1.31 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 173.90 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 7 |
| 13 | 175.37 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 3 |
| 67 | 177.82 | temperature | 20 | 1440 | > th | dose dependent | sin | 10 | NA |
| 98 | 178.53 | temperature | 20 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 153 | 180.37 | temperature | 20 | 720 | > th | dose dependent | rect. | 20 | 18 |
| 162 | 180.54 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 4 |
| 164 | 180.58 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 4 |
| 171 | 180.68 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 179 | 180.76 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 211 | 181.12 | temperature | 30 | 4320 | < th | dose dependent | rect. | 17 | 10 |
| 273 | 181.76 | temperature | 25 | 4320 | < th | dose independent | rect. | 20 | 4 |
| 307 | 182.08 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 6 |
| 319 | 182.15 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 21 |
| 325 | 182.20 | temperature | 25 | 4320 | < th | dose independent | rect. | 16 | 11 |
| 340 | 182.29 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 14 |
| 372 | 182.51 | temperature | 25 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 420 | 182.92 | temperature | 30 | 1440 | < th | dose dependent | sin | 12 | NA |
| 465 | 183.22 | temperature | 25 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 509 | 183.41 | temperature | 25 | 4320 | < th | dose independent | sin | 14 | NA |
| 512 | 183.42 | temperature | 10 | 4320 | > th | dose dependent | sin | 13 | NA |
| 557 | 183.60 | temperature | 25 | 4320 | > th | dose independent | rect. | 20 | 4 |
| 906 | 184.80 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 921 | 184.86 | temperature | 25 | 4320 | > th | dose independent | rect. | 16 | 9 |
| 924 | 184.87 | temperature | 25 | 4320 | < th | dose independent | rect. | 15 | 17 |