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Os01g0837900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Protein kinase AFC1 (EC 2.7.1.-).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.6 (0.0134) R2 : 0.403
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.609 (0.035) R2dC : 0.398 R2C : 0.397
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0538 (0.0281) R2dN8 : 0.00617 R2N8 : 0.0047
σ : 0.252
deviance : 29.09
__
_____
C
peak time of C : 6.47
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
22.95 0.225 10.6 -0.469 0.657 0.116 0.0683 -1.2 -0.0446 6.48 40.69 799 -- --
24.31 0.23 10.6 -0.348 0.607 0.141 0.464 -- -0.00339 6.51 46.34 2983 -- --
22.96 0.223 10.6 -0.471 0.657 0.116 -- -1.23 -0.0459 6.49 40.67 798 -- --
23.88 0.228 10.6 -0.285 0.613 0.263 -- -- 0.0204 6.42 46.17 33295 -- --
43.44 0.307 10.6 -0.495 -- 0.184 -- -0.811 -0.0512 -- 46.01 1390 -- --
25.1 0.235 10.6 -0.366 0.612 -- 0.485 -- 0.0153 6.43 -- -- -- --
25.69 0.237 10.6 -0.359 0.614 -- -- -- 0.0138 6.44 -- -- -- --
43.4 0.307 10.6 -0.203 -- 0.253 -- -- 0.0559 -- 45.63 34621 -- --
24.43 0.23 10.6 -- 0.616 0.331 -- -- 0.038 6.42 46.34 36630 -- --
45.28 0.314 10.6 -0.343 -- -- -- -- 0.0267 -- -- -- -- --
29.09 0.252 10.6 -- 0.609 -- -- -- 0.0538 6.47 -- -- -- --
43.95 0.309 10.6 -- -- 0.374 -- -- 0.0806 -- 46.09 34621 -- --
48.39 0.325 10.6 -- -- -- -- -- 0.0648 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 22.41 atmosphere 995.0 43200 > th dose independent rect. 14 5
2 22.41 atmosphere 995.0 43200 < th dose dependent rect. 15 4
9 22.43 atmosphere 995.0 43200 < th dose independent rect. 14 5
12 22.44 atmosphere 995.0 43200 > th dose independent rect. 15 2
14 22.46 atmosphere 995.0 43200 < th dose independent rect. 15 2
30 22.63 atmosphere 1005.0 14400 > th dose independent rect. 15 1
31 22.63 radiation 40.0 1440 < th dose independent rect. 11 1
38 22.65 radiation 10.0 1440 > th dose dependent rect. 11 1
40 22.67 radiation 1.0 14400 > th dose independent rect. 18 11
42 22.68 radiation 20.0 1440 < th dose independent rect. 11 1
43 22.69 wind 1.0 43200 < th dose dependent rect. 4 1
47 22.70 temperature 20.0 720 > th dose independent rect. 21 10
48 22.71 wind 1.0 14400 < th dose independent rect. 24 2
50 22.72 radiation 1.0 14400 > th dose independent rect. 18 1
60 22.74 wind 1.0 14400 > th dose independent rect. 24 2
62 22.74 radiation 40.0 1440 < th dose dependent rect. 11 1
65 22.76 temperature 20.0 720 > th dose independent rect. 21 8
69 22.79 temperature 20.0 720 < th dose independent rect. 24 1
70 22.79 temperature 20.0 720 < th dose independent rect. 23 3
76 22.80 atmosphere 1005.0 14400 < th dose independent rect. 15 1
77 22.80 radiation 40.0 1440 < th dose independent rect. 9 3
84 22.81 atmosphere 1005.0 30 > th dose dependent rect. 14 9
88 22.82 temperature 20.0 720 > th dose independent rect. 21 12
89 22.83 temperature 20.0 720 > th dose independent rect. 22 5
96 22.84 temperature 20.0 720 > th dose independent rect. 19 14
106 22.87 wind 1.0 43200 < th dose independent rect. 4 1
109 22.87 temperature 20.0 720 < th dose independent rect. 22 7
113 22.87 temperature 15.0 270 > th dose dependent sin 3 NA
114 22.87 temperature 15.0 270 > th dose dependent rect. 6 10
119 22.88 temperature 30.0 10 < th dose independent rect. 5 18
120 22.88 radiation 40.0 1440 < th dose independent rect. 16 20
121 22.88 temperature 20.0 270 > th dose dependent rect. 23 15
125 22.89 radiation 40.0 1440 < th dose independent rect. 5 7
139 22.89 radiation 40.0 1440 < th dose independent rect. 18 18
143 22.89 humidity 90.0 14400 > th dose dependent rect. 23 1
144 22.89 temperature 20.0 720 > th dose dependent rect. 21 10
145 22.89 temperature 20.0 30 > th dose dependent rect. 1 17
146 22.90 temperature 20.0 720 > th dose independent sin 10 NA
147 22.90 humidity 90.0 14400 > th dose independent rect. 23 1
170 22.90 temperature 25.0 10 > th dose dependent rect. 8 12
172 22.90 radiation 10.0 1440 > th dose dependent rect. 16 20
185 22.91 temperature 10.0 90 > th dose dependent sin 0 NA
190 22.91 radiation 20.0 43200 < th dose dependent rect. 13 1
192 22.91 temperature 20.0 720 > th dose dependent rect. 23 6
207 22.92 radiation 1.0 1440 > th dose dependent rect. 5 7
212 22.92 temperature 20.0 720 > th dose dependent rect. 21 12
215 22.92 temperature 20.0 720 > th dose dependent rect. 19 14
223 22.92 temperature 20.0 30 > th dose dependent rect. 23 19
229 22.93 radiation 1.0 1440 > th dose dependent rect. 7 5
235 22.94 temperature 20.0 720 < th dose independent sin 10 NA
263 22.94 temperature 30.0 270 < th dose dependent rect. 1 20
272 22.95 temperature 25.0 90 > th dose dependent sin 0 NA
275 22.95 temperature 30.0 90 < th dose dependent rect. 3 20
277 22.96 radiation 10.0 43200 < th dose independent rect. 13 1
285 22.96 radiation 1.0 14400 < th dose independent rect. 18 12
286 22.96 temperature 30.0 90 < th dose independent rect. 3 20
297 22.96 temperature 30.0 270 < th dose dependent rect. 2 18
298 22.96 temperature 30.0 10 < th dose dependent rect. 5 18
301 22.96 temperature 15.0 10 > th dose dependent rect. 6 23
302 22.97 radiation 40.0 1440 < th dose independent sin 7 NA
316 22.97 temperature 30.0 270 < th dose dependent rect. 3 16
344 22.98 radiation 40.0 720 > th dose independent rect. 13 22
347 22.98 temperature 20.0 720 > th dose dependent rect. 1 1
348 22.98 humidity 90.0 14400 > th dose dependent rect. 4 3
365 22.99 wind 1.0 43200 > th dose independent rect. 4 1
375 22.99 atmosphere 1005.0 10 > th dose independent rect. 5 18
376 22.99 temperature 30.0 270 < th dose independent rect. 1 20
378 22.99 temperature 20.0 720 > th dose dependent sin 10 NA
379 22.99 temperature 25.0 10 > th dose dependent sin 22 NA
389 22.99 radiation 30.0 1440 > th dose dependent rect. 9 3
399 23.00 radiation 30.0 1440 > th dose independent rect. 11 1
410 23.00 atmosphere 995.0 43200 < th dose independent rect. 21 16
413 23.00 atmosphere 995.0 43200 > th dose independent rect. 20 18
419 23.00 radiation 20.0 1440 < th dose independent rect. 15 22
474 23.01 humidity 90.0 14400 > th dose independent rect. 22 5
479 23.01 atmosphere 995.0 43200 < th dose independent rect. 22 14
480 23.01 atmosphere 995.0 43200 > th dose independent rect. 22 15
486 23.01 radiation 30.0 720 > th dose independent rect. 15 18
488 23.01 radiation 40.0 720 < th dose independent rect. 1 23
502 23.01 temperature 25.0 10 > th dose dependent rect. 4 16
508 23.01 temperature 15.0 30 > th dose dependent rect. 23 21
511 23.02 temperature 20.0 4320 < th dose independent rect. 22 1
513 23.02 humidity 90.0 14400 > th dose independent rect. 21 7
515 23.02 humidity 90.0 14400 > th dose independent rect. 21 10
517 23.02 humidity 90.0 14400 > th dose independent rect. 18 11
519 23.02 atmosphere 995.0 43200 > th dose independent rect. 23 13
527 23.02 temperature 30.0 270 < th dose independent rect. 3 16
536 23.02 atmosphere 995.0 43200 < th dose dependent sin 9 NA
560 23.03 atmosphere 995.0 43200 > th dose independent rect. 4 5
568 23.03 atmosphere 995.0 43200 > th dose independent rect. 1 10
588 23.03 temperature 25.0 10 > th dose dependent rect. 8 10
590 23.03 temperature 30.0 270 < th dose dependent rect. 2 10
609 23.04 radiation 40.0 720 > th dose independent no NA NA
610 23.04 temperature 20.0 720 > th dose independent rect. 1 1
612 23.04 atmosphere 995.0 43200 > th dose independent rect. 5 3
618 23.04 radiation 40.0 720 > th dose independent rect. 8 7
629 23.04 atmosphere 995.0 43200 < th dose independent rect. 1 10
794 23.04 radiation 1.0 43200 > th dose dependent rect. 13 1
804 23.05 radiation 40.0 720 > th dose independent sin 23 NA
809 23.05 humidity 90.0 4320 > th dose independent rect. 18 1
812 23.05 radiation 40.0 43200 > th dose independent rect. 13 1
815 23.05 atmosphere 995.0 43200 < th dose independent rect. 3 6
817 23.05 atmosphere 995.0 43200 > th dose independent rect. 3 7
821 23.05 atmosphere 995.0 43200 < th dose independent rect. 2 8
845 23.05 radiation 40.0 1440 > th dose dependent sin 10 NA
848 23.05 atmosphere 995.0 43200 < th dose dependent rect. 4 4
850 23.05 precipitation 0.1 43200 > th dose dependent rect. 3 5
852 23.05 atmosphere 995.0 43200 < th dose dependent rect. 1 8
854 23.05 atmosphere 995.0 43200 < th dose dependent rect. 22 12
866 23.05 temperature 10.0 270 > th dose dependent rect. 19 22
868 23.06 atmosphere 995.0 43200 < th dose independent sin 7 NA
872 23.06 atmosphere 995.0 43200 < th dose independent rect. 5 3
877 23.06 precipitation 0.1 43200 > th dose independent rect. 3 5
878 23.06 precipitation 0.1 43200 < th dose independent rect. 3 5
881 23.06 humidity 90.0 14400 < th dose independent rect. 21 7
926 23.06 radiation 1.0 1440 > th dose dependent sin 7 NA
927 23.06 radiation 20.0 720 > th dose dependent sin 12 NA
928 23.06 radiation 1.0 43200 < th dose dependent rect. 4 1
931 23.06 precipitation 0.1 43200 < th dose dependent rect. 3 5
997 23.08 humidity 90.0 14400 < th dose independent rect. 22 5