Os01g0837700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0837700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 364.95 | 0.898 | 3.23 | 0.188 | 0.123 | 5.6 | 0.73 | 14.1 | -0.131 | 4.08 | 39.62 | 547 | 8.08 | 0.976 |
| 441.33 | 0.978 | 3.18 | 0.376 | 0.243 | 5.45 | 0.868 | -- | -0.00227 | 3.96 | 40.65 | 176 | 8.1 | 1.03 |
| 366.29 | 0.891 | 3.23 | 0.194 | 0.131 | 5.49 | -- | 13.6 | -0.133 | 5.15 | 39.55 | 546 | 8.08 | 0.983 |
| 409.82 | 0.943 | 3.13 | 0.542 | 0.177 | 2.08 | -- | -- | 0.16 | 0.249 | 37.58 | 186 | 8.1 | 0.978 |
| 367.22 | 0.893 | 3.23 | 0.184 | -- | 5.38 | -- | 13.4 | -0.136 | -- | 39.61 | 546 | 8.08 | 0.98 |
| 396.2 | 0.933 | 3.17 | 0.0481 | 0.127 | -- | 0.103 | -- | -0.183 | 10.3 | -- | -- | -- | -- |
| 396.24 | 0.932 | 3.17 | 0.0525 | 0.127 | -- | -- | -- | -0.183 | 10.5 | -- | -- | -- | -- |
| 389.36 | 0.919 | 3.16 | 0.0521 | -- | 1.3 | -- | -- | -0.146 | -- | 30.7 | 14 | 9.55 | 2.23 |
| 388.25 | 0.918 | 3.16 | -- | 0.0295 | 2.07 | -- | -- | -0.107 | 23.5 | 35.3 | 14 | 8.28 | 1.65 |
| 397.23 | 0.931 | 3.17 | 0.0502 | -- | -- | -- | -- | -0.183 | -- | -- | -- | -- | -- |
| 396.32 | 0.931 | 3.17 | -- | 0.126 | -- | -- | -- | -0.189 | 10.5 | -- | -- | -- | -- |
| 387.44 | 0.917 | 3.17 | -- | -- | 1.91 | -- | -- | -0.121 | -- | 32.01 | 11 | 8.3 | 1.65 |
| 397.3 | 0.93 | 3.17 | -- | -- | -- | -- | -- | -0.189 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 371.18 | radiation | 4e+01 | 720 | > th | dose dependent | rect. | 8 | 1 |
| 19 | 372.22 | wind | 1e+00 | 90 | < th | dose independent | rect. | 8 | 1 |
| 20 | 372.89 | wind | 1e+00 | 90 | < th | dose dependent | rect. | 8 | 1 |
| 21 | 373.12 | humidity | 6e+01 | 90 | < th | dose independent | rect. | 9 | 1 |
| 36 | 373.13 | humidity | 6e+01 | 90 | < th | dose dependent | rect. | 9 | 1 |
| 51 | 374.89 | radiation | 4e+01 | 30 | > th | dose independent | rect. | 14 | 20 |
| 52 | 374.91 | radiation | 4e+01 | 30 | > th | dose independent | rect. | 9 | 1 |
| 92 | 376.25 | radiation | 4e+01 | 30 | > th | dose independent | rect. | 12 | 22 |
| 94 | 376.47 | radiation | 4e+01 | 30 | > th | dose independent | sin | 12 | NA |
| 97 | 376.86 | wind | 3e+00 | 10 | < th | dose dependent | rect. | 9 | 1 |
| 99 | 377.29 | radiation | 2e+01 | 720 | > th | dose dependent | rect. | 6 | 1 |
| 134 | 377.69 | radiation | 3e+01 | 30 | > th | dose dependent | rect. | 9 | 1 |
| 138 | 377.95 | radiation | 3e+01 | 30 | > th | dose dependent | rect. | 15 | 19 |
| 143 | 378.30 | radiation | 4e+01 | 30 | < th | dose independent | sin | 12 | NA |
| 144 | 378.33 | atmosphere | 1e+03 | 270 | < th | dose independent | rect. | 23 | 8 |
| 231 | 378.86 | temperature | 2e+01 | 90 | < th | dose dependent | rect. | 21 | 1 |
| 236 | 378.90 | wind | 3e+00 | 10 | < th | dose independent | rect. | 9 | 1 |
| 244 | 378.90 | atmosphere | 1e+03 | 10 | < th | dose dependent | rect. | 24 | 10 |
| 259 | 378.96 | temperature | 2e+01 | 90 | < th | dose independent | rect. | 20 | 1 |
| 266 | 379.02 | atmosphere | 1e+03 | 270 | < th | dose dependent | rect. | 23 | 9 |
| 313 | 379.73 | atmosphere | 1e+03 | 10 | < th | dose independent | rect. | 24 | 10 |
| 369 | 380.18 | radiation | 3e+01 | 30 | > th | dose dependent | rect. | 12 | 23 |
| 375 | 380.25 | atmosphere | 1e+03 | 270 | < th | dose independent | rect. | 4 | 2 |
| 377 | 380.28 | radiation | 3e+01 | 90 | > th | dose dependent | sin | 12 | NA |
| 379 | 380.30 | radiation | 2e+01 | 720 | > th | dose independent | rect. | 6 | 1 |
| 461 | 380.80 | atmosphere | 1e+03 | 720 | < th | dose dependent | rect. | 22 | 1 |
| 465 | 380.88 | atmosphere | 1e+03 | 90 | < th | dose dependent | rect. | 3 | 7 |
| 516 | 381.09 | atmosphere | 1e+03 | 270 | < th | dose dependent | rect. | 5 | 1 |
| 517 | 381.10 | wind | 5e+00 | 10 | > th | dose independent | rect. | 13 | 10 |
| 608 | 381.43 | wind | 5e+00 | 10 | > th | dose independent | rect. | 13 | 7 |
| 609 | 381.43 | atmosphere | 1e+03 | 270 | < th | dose dependent | rect. | 3 | 4 |
| 703 | 381.90 | wind | 5e+00 | 10 | > th | dose independent | rect. | 13 | 5 |
| 718 | 381.91 | radiation | 1e+01 | 90 | < th | dose dependent | rect. | 8 | 2 |
| 801 | 382.24 | atmosphere | 1e+03 | 720 | < th | dose independent | rect. | 22 | 3 |
| 832 | 382.43 | wind | 5e+00 | 10 | < th | dose independent | rect. | 10 | 13 |
| 834 | 382.47 | precipitation | 1e-01 | 4320 | < th | dose independent | rect. | 6 | 2 |
| 854 | 382.47 | precipitation | 1e-01 | 4320 | < th | dose dependent | rect. | 6 | 2 |
| 872 | 382.48 | atmosphere | 1e+03 | 10 | < th | dose independent | rect. | 19 | 16 |
| 900 | 382.58 | wind | 5e+00 | 270 | > th | dose independent | rect. | 12 | 3 |
| 901 | 382.58 | atmosphere | 1e+03 | 90 | < th | dose dependent | rect. | 19 | 15 |
| 934 | 382.69 | wind | 5e+00 | 10 | > th | dose dependent | rect. | 13 | 10 |
| 980 | 382.80 | wind | 1e+00 | 90 | < th | dose dependent | rect. | 8 | 7 |
| 998 | 382.98 | atmosphere | 1e+03 | 720 | < th | dose independent | rect. | 22 | 1 |