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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0836600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : ABC transporter related domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.98 (0.0636) R2 : 0.733
β1 : -1.93 (0.233) R2dD : 0.0424 R2D : 0.0394
β2 : 5.15 (0.18) R2dC : 0.599 R2C : 0.092
β3 : -5.13 (0.187) R2dE : 0.547 R2E : 0.0676
β4 : -2.89 (0.701) R2dD*C : 0.01 R2D*C : 0.0174
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.997 (0.136) R2dN8 : 0.043 R2N8 : 0.00391
σ : 1.19
deviance : 649.56
__
_____
C
peak time of C : 7.85
E
wheather : radiation
threshold : 14.28
memory length : 67
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 23.3
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
649.95 1.2 4.99 -1.96 5.2 -5.18 -2.84 -0.185 -1.01 7.74 14.32 70 23.4 --
649.56 1.19 4.98 -1.93 5.15 -5.13 -2.89 -- -0.997 7.85 14.28 67 23.3 --
671.25 1.21 4.99 -2.02 5.35 -5.35 -- -0.713 -0.981 7.73 14.7 67 23.3 --
673 1.21 4.99 -1.99 5.2 -5.29 -- -- -1.02 7.77 13.7 66 23.2 --
1078.38 1.54 5.09 -2.05 -- -4.1 -- 1.51 -0.849 -- 28 6 6.26 --
1030.5 1.5 4.99 -2 4.43 -- -1.68 -- -0.814 11.3 -- -- -- --
1042.51 1.51 4.99 -2.07 4.43 -- -- -- -0.819 11.3 -- -- -- --
1044.63 1.51 5.09 -2.07 -- -4.4 -- -- -0.821 -- 488.7 11 6.78 --
776.48 1.3 4.95 -- 5.04 -5.29 -- -- -0.812 7.92 11.94 67 23 --
2273.19 2.23 5.1 -2.18 -- -- -- -- -0.861 -- -- -- -- --
1155.1 1.59 4.94 -- 4.45 -- -- -- -0.589 11.3 -- -- -- --
1156.45 1.59 5.04 -- -- -4.42 -- -- -0.591 -- 761.5 2 6.64 --
2398.4 2.29 5.04 -- -- -- -- -- -0.62 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 661.53 radiation 10.0 90 < th dose dependent sin 5 NA
13 697.67 humidity 80.0 10 > th dose dependent sin 4 NA
16 702.03 radiation 10.0 90 < th dose dependent rect. 1 13
27 710.74 radiation 10.0 90 < th dose dependent rect. 1 7
33 711.71 radiation 10.0 30 < th dose independent sin 5 NA
40 717.79 radiation 10.0 90 < th dose independent rect. 1 9
46 719.55 radiation 10.0 90 < th dose independent rect. 1 7
51 720.90 radiation 10.0 90 < th dose independent rect. 1 12
52 721.12 humidity 80.0 10 > th dose dependent rect. 2 13
57 722.72 radiation 1.0 270 < th dose independent rect. 23 7
73 726.13 radiation 1.0 270 < th dose independent rect. 23 13
81 726.62 radiation 10.0 270 < th dose dependent rect. 23 7
85 727.69 radiation 1.0 270 < th dose dependent rect. 23 13
98 729.85 humidity 80.0 90 > th dose dependent rect. 1 7
104 730.29 humidity 50.0 270 > th dose dependent rect. 23 6
116 732.60 radiation 1.0 270 > th dose independent sin 7 NA
119 732.99 atmosphere 1015.0 270 < th dose independent rect. 23 6
121 733.13 humidity 50.0 90 > th dose dependent rect. 1 5
126 733.91 precipitation 0.1 270 < th dose independent rect. 5 18
127 733.91 precipitation 0.1 270 < th dose dependent rect. 5 18
145 735.44 humidity 90.0 30 < th dose independent rect. 6 8
162 736.56 temperature 15.0 270 > th dose independent rect. 23 6
168 736.82 wind 9.0 90 < th dose independent rect. 1 5
170 736.84 temperature 10.0 90 > th dose independent rect. 1 5
172 736.84 temperature 30.0 90 < th dose independent rect. 1 5
173 736.84 humidity 50.0 90 > th dose independent rect. 1 5
176 736.84 atmosphere 995.0 90 > th dose independent rect. 1 5
177 736.84 atmosphere 1010.0 90 < th dose independent rect. 1 5
182 736.84 temperature 10.0 90 > th dose independent rect. 6 19
187 737.06 temperature 30.0 270 < th dose independent rect. 23 6
188 737.06 humidity 50.0 270 > th dose independent rect. 23 6
191 737.06 atmosphere 995.0 270 > th dose independent rect. 23 6
197 737.12 wind 9.0 270 < th dose independent rect. 23 6
205 737.64 precipitation 0.1 90 < th dose independent rect. 1 5
206 737.64 precipitation 0.1 90 < th dose dependent rect. 1 5
233 739.68 radiation 40.0 270 < th dose dependent rect. 15 9
256 741.02 humidity 50.0 270 > th dose dependent rect. 1 3
274 741.98 precipitation 0.1 270 < th dose independent rect. 23 6
275 741.98 precipitation 0.1 270 < th dose dependent rect. 23 6
279 742.20 wind 9.0 90 < th dose dependent rect. 1 5
283 742.57 radiation 10.0 90 < th dose independent rect. 1 16
294 743.02 precipitation 0.1 270 < th dose independent rect. 4 21
295 743.02 precipitation 0.1 270 < th dose dependent rect. 4 21
302 743.96 wind 9.0 90 < th dose independent rect. 6 19
304 744.17 temperature 10.0 270 > th dose independent rect. 1 3
306 744.17 temperature 30.0 270 < th dose independent rect. 1 3
307 744.17 humidity 50.0 270 > th dose independent rect. 1 3
310 744.17 atmosphere 995.0 270 > th dose independent rect. 1 3
311 744.17 atmosphere 1010.0 270 < th dose independent rect. 1 3
313 744.17 radiation 1.0 270 < th dose independent rect. 1 3
328 744.17 temperature 10.0 270 > th dose independent rect. 4 21
329 744.17 radiation 1.0 270 < th dose dependent rect. 1 3
337 744.24 wind 9.0 270 < th dose independent rect. 1 3
345 744.81 radiation 20.0 270 < th dose independent rect. 15 9
349 745.05 humidity 90.0 30 < th dose independent rect. 4 10
362 745.92 humidity 50.0 270 > th dose independent rect. 5 18
389 747.70 humidity 50.0 270 > th dose independent rect. 16 8
392 747.81 precipitation 0.1 270 < th dose independent rect. 1 3
393 747.81 precipitation 0.1 270 < th dose dependent rect. 1 3
411 749.21 temperature 10.0 90 > th dose dependent rect. 1 5
457 751.54 wind 9.0 270 < th dose dependent rect. 1 3
471 751.92 atmosphere 995.0 270 > th dose independent rect. 5 18
477 752.20 wind 9.0 270 < th dose dependent rect. 23 6
488 752.64 atmosphere 1015.0 90 < th dose dependent rect. 1 5
504 753.09 wind 7.0 90 < th dose independent rect. 14 16
554 754.57 radiation 1.0 90 > th dose independent rect. 6 8
558 754.71 wind 9.0 270 < th dose independent rect. 4 21
599 756.49 precipitation 0.1 270 < th dose independent rect. 4 9
600 756.49 precipitation 0.1 270 < th dose dependent rect. 4 9
615 757.18 temperature 15.0 270 > th dose independent rect. 4 9
628 757.65 humidity 80.0 10 > th dose independent rect. 1 7
639 758.19 humidity 90.0 90 > th dose independent rect. 1 7
655 758.74 atmosphere 1015.0 270 < th dose dependent rect. 1 3
701 760.44 atmosphere 995.0 270 > th dose independent rect. 4 9
702 760.44 atmosphere 1015.0 270 < th dose independent rect. 4 9
703 760.44 temperature 10.0 270 > th dose independent rect. 13 15
704 760.50 temperature 10.0 270 > th dose dependent rect. 1 3
816 763.12 temperature 30.0 270 < th dose independent rect. 16 8
835 763.25 wind 9.0 270 < th dose independent rect. 4 9
857 764.01 precipitation 0.1 90 < th dose independent rect. 6 8
858 764.01 precipitation 0.1 90 < th dose dependent rect. 6 8
859 764.03 temperature 10.0 270 > th dose dependent rect. 23 6
871 764.49 wind 9.0 10 < th dose dependent rect. 1 6
965 767.02 temperature 15.0 90 > th dose independent rect. 6 8
969 767.14 humidity 90.0 30 < th dose independent sin 3 NA
972 767.19 temperature 30.0 270 < th dose independent rect. 18 15
989 767.69 atmosphere 1015.0 10 < th dose dependent rect. 2 5
993 767.81 humidity 60.0 270 > th dose independent rect. 18 15
996 767.92 wind 9.0 10 < th dose independent rect. 1 6
997 767.92 temperature 10.0 10 > th dose independent rect. 1 6
999 767.92 temperature 30.0 10 < th dose independent rect. 1 6
1000 767.92 humidity 50.0 10 > th dose independent rect. 1 6