Os01g0835600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : HMG-I and HMG-Y, DNA-binding domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os01g0835600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : HMG-I and HMG-Y, DNA-binding domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 43.42 | 0.31 | 10.1 | 0.768 | 1.21 | -1.07 | 0.22 | 1.6 | 0.262 | 1.97 | 21.96 | 1536 | -- | -- |
| 47.37 | 0.321 | 10.2 | 0.425 | 1.2 | -0.93 | 0.32 | -- | 0.186 | 1.91 | 20.86 | 7313 | -- | -- |
| 43.6 | 0.308 | 10.1 | 0.774 | 1.21 | -1.07 | -- | 1.65 | 0.262 | 1.98 | 22.07 | 1535 | -- | -- |
| 46.23 | 0.317 | 10.2 | 0.319 | 1.26 | -0.9 | -- | -- | 0.137 | 2.05 | 22.49 | 1511 | -- | -- |
| 63.57 | 0.373 | 10.1 | 0.679 | -- | -2.09 | -- | 2.22 | 0.328 | -- | 22.07 | 1535 | -- | -- |
| 77.8 | 0.414 | 10.2 | -0.0798 | 1.18 | -- | 0.177 | -- | -0.1 | 2.01 | -- | -- | -- | -- |
| 77.92 | 0.413 | 10.2 | -0.0852 | 1.18 | -- | -- | -- | -0.101 | 2.02 | -- | -- | -- | -- |
| 66.71 | 0.382 | 10.2 | 0.34 | -- | -1.98 | -- | -- | 0.239 | -- | 21.18 | 1721 | -- | -- |
| 47.3 | 0.32 | 10.2 | -- | 1.23 | -0.879 | -- | -- | 0.0797 | 2.02 | 21.8 | 1500 | -- | -- |
| 161.51 | 0.594 | 10.2 | -0.0362 | -- | -- | -- | -- | -0.0736 | -- | -- | -- | -- | -- |
| 78.11 | 0.413 | 10.2 | -- | 1.18 | -- | -- | -- | -0.0918 | 2.02 | -- | -- | -- | -- |
| 69.64 | 0.39 | 10.2 | -- | -- | -1.91 | -- | -- | 0.192 | -- | 21.18 | 1721 | -- | -- |
| 161.54 | 0.593 | 10.2 | -- | -- | -- | -- | -- | -0.0696 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 40.77 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 15 | 42.51 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 4 |
| 16 | 42.51 | temperature | 20 | 1440 | > th | dose dependent | rect. | 8 | 13 |
| 19 | 42.53 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 10 |
| 31 | 42.59 | temperature | 20 | 720 | > th | dose dependent | sin | 6 | NA |
| 47 | 42.70 | temperature | 20 | 1440 | > th | dose dependent | sin | 21 | NA |
| 148 | 43.27 | temperature | 10 | 1440 | > th | dose dependent | rect. | 7 | 12 |
| 618 | 44.36 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 636 | 44.39 | temperature | 20 | 1440 | > th | dose dependent | rect. | 10 | 23 |
| 738 | 44.58 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 791 | 44.66 | temperature | 30 | 720 | < th | dose dependent | rect. | 18 | 20 |
| 824 | 44.72 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 21 |
| 831 | 44.73 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 19 |
| 905 | 44.85 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 936 | 44.89 | temperature | 20 | 270 | > th | dose dependent | rect. | 2 | 22 |