Os01g0835000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0835000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 46.99 | 0.322 | 9.41 | -1.1 | 1.34 | -0.287 | -0.469 | -2.33 | 0.0474 | 18.3 | 16.72 | 9 | -- | -- |
| 51.2 | 0.336 | 9.36 | -0.74 | 1.36 | -0.415 | -0.746 | -- | 0.161 | 18.1 | 21.6 | 9 | -- | -- |
| 47.46 | 0.321 | 9.41 | -1.1 | 1.36 | -0.275 | -- | -2.32 | 0.0474 | 18.3 | 17.2 | 63 | -- | -- |
| 51.89 | 0.336 | 9.37 | -0.73 | 1.4 | -0.418 | -- | -- | 0.156 | 18.3 | 22.4 | 121 | -- | -- |
| 112.33 | 0.494 | 9.42 | -1.4 | -- | 1.15 | -- | -3.13 | -0.0983 | -- | 25.11 | 446 | -- | -- |
| 53.91 | 0.344 | 9.38 | -0.824 | 1.28 | -- | -0.643 | -- | 0.0935 | 18.5 | -- | -- | -- | -- |
| 54.84 | 0.347 | 9.38 | -0.816 | 1.28 | -- | -- | -- | 0.0908 | 18.6 | -- | -- | -- | -- |
| 117.08 | 0.504 | 9.37 | -0.994 | -- | 0.889 | -- | -- | 0.00969 | -- | 25.2 | 485 | -- | -- |
| 64.93 | 0.375 | 9.34 | -- | 1.45 | -0.619 | -- | -- | 0.259 | 18.1 | 21.15 | 121 | -- | -- |
| 139.77 | 0.552 | 9.35 | -0.847 | -- | -- | -- | -- | 0.0649 | -- | -- | -- | -- | -- |
| 72.39 | 0.398 | 9.36 | -- | 1.29 | -- | -- | -- | 0.182 | 18.6 | -- | -- | -- | -- |
| 142.41 | 0.556 | 9.34 | -- | -- | 0.747 | -- | -- | 0.135 | -- | 25.5 | 459 | -- | -- |
| 158.68 | 0.588 | 9.33 | -- | -- | -- | -- | -- | 0.159 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 41.48 | temperature | 15.0 | 270 | > th | dose independent | rect. | 20 | 8 |
| 2 | 41.55 | temperature | 15.0 | 270 | > th | dose independent | rect. | 4 | 15 |
| 6 | 41.93 | temperature | 10.0 | 270 | > th | dose independent | rect. | 12 | 11 |
| 7 | 41.93 | temperature | 10.0 | 270 | > th | dose independent | rect. | 23 | 13 |
| 8 | 41.93 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 23 | 13 |
| 12 | 42.07 | wind | 1.0 | 270 | > th | dose independent | rect. | 12 | 11 |
| 13 | 42.07 | humidity | 50.0 | 270 | > th | dose independent | rect. | 23 | 13 |
| 15 | 42.17 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 23 | 13 |
| 16 | 42.17 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 23 | 13 |
| 18 | 42.21 | wind | 9.0 | 270 | < th | dose independent | rect. | 13 | 10 |
| 20 | 42.26 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 23 | 13 |
| 30 | 42.38 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 12 | 11 |
| 31 | 42.38 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 12 | 11 |
| 32 | 42.38 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 15 | 17 |
| 34 | 42.41 | radiation | 20.0 | 270 | < th | dose independent | rect. | 15 | 17 |
| 36 | 42.44 | wind | 9.0 | 270 | < th | dose independent | rect. | 23 | 13 |
| 42 | 42.53 | temperature | 15.0 | 10 | > th | dose independent | rect. | 20 | 9 |
| 43 | 42.56 | humidity | 50.0 | 270 | > th | dose independent | rect. | 15 | 17 |
| 44 | 42.56 | radiation | 1.0 | 10 | < th | dose dependent | sin | 9 | NA |
| 57 | 42.67 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 9 | 19 |
| 65 | 42.79 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 19 | 9 |
| 75 | 42.94 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 10 | 10 |
| 76 | 42.95 | radiation | 20.0 | 10 | < th | dose dependent | sin | 10 | NA |
| 89 | 43.03 | wind | 9.0 | 270 | < th | dose independent | rect. | 16 | 16 |
| 92 | 43.09 | temperature | 10.0 | 270 | > th | dose independent | rect. | 8 | 8 |
| 93 | 43.09 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 8 | 8 |
| 94 | 43.09 | wind | 9.0 | 270 | < th | dose independent | rect. | 4 | 15 |
| 95 | 43.09 | temperature | 10.0 | 270 | > th | dose independent | rect. | 16 | 16 |
| 98 | 43.09 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 11 | 17 |
| 99 | 43.10 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 8 | 8 |
| 101 | 43.10 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 8 | 8 |
| 102 | 43.11 | humidity | 50.0 | 270 | > th | dose independent | rect. | 4 | 15 |
| 106 | 43.17 | radiation | 1.0 | 270 | > th | dose independent | rect. | 8 | 10 |
| 108 | 43.18 | wind | 9.0 | 270 | < th | dose independent | rect. | 8 | 8 |
| 109 | 43.19 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 10 | 8 |
| 110 | 43.19 | radiation | 1.0 | 270 | > th | dose independent | rect. | 8 | 8 |
| 116 | 43.22 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 16 | 16 |
| 117 | 43.22 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 16 | 16 |
| 137 | 43.29 | radiation | 10.0 | 270 | < th | dose independent | rect. | 18 | 10 |
| 140 | 43.31 | humidity | 60.0 | 270 | > th | dose independent | rect. | 19 | 9 |
| 144 | 43.32 | temperature | 30.0 | 270 | < th | dose independent | rect. | 19 | 9 |
| 146 | 43.32 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 19 | 9 |
| 153 | 43.32 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 4 | 15 |
| 157 | 43.32 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 19 | 9 |
| 162 | 43.33 | atmosphere | 1010.0 | 10 | < th | dose independent | rect. | 20 | 9 |
| 167 | 43.35 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 8 | 8 |
| 169 | 43.36 | wind | 9.0 | 270 | < th | dose independent | rect. | 19 | 9 |
| 176 | 43.37 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 20 | 8 |
| 178 | 43.37 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 12 | 10 |
| 179 | 43.37 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 20 | 8 |
| 181 | 43.38 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 4 | 16 |
| 183 | 43.38 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 4 | 16 |
| 184 | 43.39 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 20 | 7 |
| 218 | 43.41 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 16 | 16 |
| 224 | 43.44 | radiation | 1.0 | 10 | < th | dose independent | sin | 9 | NA |
| 227 | 43.46 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 13 | 10 |
| 229 | 43.46 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 8 | 7 |
| 232 | 43.47 | radiation | 40.0 | 270 | < th | dose independent | rect. | 12 | 11 |
| 235 | 43.47 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 9 | 20 |
| 252 | 43.53 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 20 | 16 |
| 257 | 43.54 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 20 | 11 |
| 263 | 43.54 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 16 | 16 |
| 270 | 43.58 | wind | 1.0 | 270 | > th | dose independent | rect. | 8 | 8 |
| 274 | 43.60 | temperature | 20.0 | 270 | > th | dose independent | rect. | 8 | 8 |
| 280 | 43.64 | wind | 9.0 | 10 | < th | dose independent | rect. | 5 | 15 |
| 288 | 43.67 | wind | 1.0 | 270 | > th | dose independent | rect. | 23 | 14 |
| 300 | 43.71 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 20 | 9 |
| 302 | 43.72 | temperature | 15.0 | 10 | > th | dose independent | rect. | 22 | 7 |
| 304 | 43.72 | temperature | 30.0 | 270 | < th | dose independent | rect. | 16 | 16 |
| 310 | 43.73 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 14 |
| 312 | 43.73 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 5 | 15 |
| 321 | 43.74 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 4 | 16 |
| 354 | 43.83 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 23 | 14 |
| 376 | 43.86 | humidity | 50.0 | 270 | > th | dose independent | rect. | 8 | 7 |
| 384 | 43.88 | atmosphere | 1015.0 | 720 | < th | dose independent | rect. | 3 | 6 |
| 386 | 43.88 | humidity | 90.0 | 270 | < th | dose independent | rect. | 20 | 7 |
| 408 | 43.93 | humidity | 90.0 | 270 | < th | dose independent | rect. | 20 | 9 |
| 414 | 43.95 | temperature | 15.0 | 720 | > th | dose independent | rect. | 3 | 6 |
| 484 | 44.06 | humidity | 50.0 | 270 | > th | dose independent | rect. | 13 | 9 |
| 538 | 44.14 | temperature | 30.0 | 30 | < th | dose independent | rect. | 5 | 15 |
| 557 | 44.16 | atmosphere | 1010.0 | 10 | < th | dose independent | rect. | 22 | 7 |
| 580 | 44.18 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 22 | 5 |
| 582 | 44.18 | wind | 7.0 | 10 | < th | dose independent | rect. | 20 | 9 |
| 646 | 44.23 | temperature | 30.0 | 10 | < th | dose independent | rect. | 20 | 9 |
| 647 | 44.23 | humidity | 50.0 | 10 | > th | dose independent | rect. | 20 | 9 |
| 650 | 44.23 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 20 | 9 |
| 651 | 44.23 | radiation | 1.0 | 10 | < th | dose independent | rect. | 20 | 9 |
| 657 | 44.23 | temperature | 10.0 | 10 | > th | dose independent | rect. | 5 | 15 |
| 659 | 44.23 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 5 | 15 |
| 670 | 44.24 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 20 | 9 |
| 677 | 44.24 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 20 | 9 |
| 687 | 44.26 | wind | 1.0 | 270 | > th | dose independent | rect. | 20 | 8 |
| 773 | 44.33 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 5 | 15 |
| 777 | 44.33 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 5 | 15 |
| 823 | 44.38 | radiation | 1.0 | 10 | < th | dose independent | rect. | 20 | 16 |
| 833 | 44.39 | radiation | 1.0 | 10 | < th | dose independent | rect. | 20 | 11 |
| 862 | 44.44 | temperature | 20.0 | 90 | > th | dose independent | rect. | 4 | 6 |
| 873 | 44.45 | radiation | 1.0 | 720 | > th | dose independent | rect. | 16 | 13 |
| 887 | 44.46 | humidity | 50.0 | 10 | > th | dose independent | rect. | 5 | 15 |
| 891 | 44.46 | wind | 9.0 | 270 | < th | dose dependent | rect. | 20 | 7 |
| 892 | 44.46 | wind | 9.0 | 270 | < th | dose dependent | rect. | 18 | 9 |
| 896 | 44.47 | temperature | 15.0 | 270 | > th | dose independent | sin | 9 | NA |
| 914 | 44.49 | temperature | 20.0 | 10 | > th | dose independent | rect. | 5 | 6 |
| 920 | 44.50 | radiation | 1.0 | 720 | > th | dose independent | rect. | 16 | 3 |
| 963 | 44.53 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 9 | 14 |