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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0833500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Serine carboxypeptidase II-1 precursor (EC 3.4.16.6) (CP-MII.1) (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.04 (0.0423) R2 : 0.11
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 4.03 (0.552) R2dE : 0.104 R2E : 0.104
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.135 (0.0892) R2dN8 : 0.00573 R2N8 : 0.00637
σ : 0.795
deviance : 291.39
__
_____
C
peak time of C : --
E
wheather : humidity
threshold : 89.59
memory length : 68
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 8.02
open length of G : 1.03

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
282.48 0.79 3.03 0.117 0.398 2.41 -0.224 5.61 -0.137 3.45 90 89 8.01 0.933
284.34 0.785 3.03 0.0985 0.394 4.13 -0.247 -- -0.126 3.45 90.28 77 8 1.01
282.64 0.783 3.03 0.121 0.396 2.41 -- 5.61 -0.136 3.42 90.03 88 8.01 0.917
284.34 0.785 3.03 0.0904 0.381 4.21 -- -- -0.126 3.33 90.23 76 8 1
291.45 0.795 3.03 0.144 -- 2.46 -- 5.41 -0.123 -- 90.42 82 8.02 0.933
315.7 0.833 3.04 0.157 0.399 -- -0.237 -- -0.156 4.06 -- -- -- --
315.86 0.832 3.03 0.159 0.399 -- -- -- -0.155 4.15 -- -- -- --
291.68 0.795 3.02 0.129 -- 4.02 -- -- -0.11 -- 89.17 68 8.15 0.917
282.66 0.783 3.04 -- 0.381 4.04 -- -- -0.148 3.29 89.58 68 8 1.04
324.47 0.842 3.04 0.175 -- -- -- -- -0.144 -- -- -- -- --
316.53 0.832 3.04 -- 0.402 -- -- -- -0.172 4.14 -- -- -- --
291.39 0.795 3.04 -- -- 4.03 -- -- -0.135 -- 89.59 68 8.02 1.03
325.28 0.842 3.04 -- -- -- -- -- -0.163 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 282.80 humidity 90.0 90 > th dose independent rect. 8 1
3 283.49 humidity 90.0 90 > th dose dependent rect. 9 1
5 287.78 humidity 90.0 90 > th dose dependent rect. 8 11
9 290.74 humidity 90.0 90 > th dose independent rect. 8 11
18 292.24 humidity 90.0 270 > th dose dependent rect. 5 14
23 292.57 wind 3.0 90 < th dose dependent rect. 8 1
28 293.00 humidity 90.0 90 > th dose dependent rect. 8 8
33 293.32 humidity 90.0 90 > th dose independent rect. 8 7
51 294.51 wind 3.0 90 < th dose independent rect. 9 1
69 295.87 humidity 90.0 270 > th dose dependent rect. 5 4
74 296.10 precipitation 0.1 90 < th dose independent rect. 10 18
75 296.10 precipitation 0.1 90 < th dose dependent rect. 10 18
89 296.40 humidity 70.0 30 > th dose independent rect. 5 6
102 296.73 temperature 25.0 30 > th dose independent rect. 23 1
116 296.91 wind 5.0 30 < th dose independent rect. 5 6
119 296.93 temperature 25.0 90 < th dose independent rect. 20 8
129 297.23 humidity 90.0 270 > th dose independent rect. 5 13
133 297.35 wind 9.0 90 < th dose dependent rect. 17 17
145 297.77 radiation 1.0 90 > th dose independent rect. 10 9
157 297.83 humidity 90.0 270 > th dose dependent sin 0 NA
163 297.93 wind 9.0 30 < th dose dependent rect. 5 6
165 298.03 temperature 30.0 10 < th dose independent rect. 5 6
169 298.11 humidity 90.0 90 < th dose independent rect. 10 9
170 298.11 wind 5.0 90 < th dose independent rect. 19 15
179 298.26 temperature 15.0 10 > th dose independent rect. 11 18
190 298.40 temperature 10.0 10 > th dose dependent rect. 5 6
195 298.46 temperature 10.0 10 > th dose independent rect. 5 6
198 298.46 atmosphere 995.0 10 > th dose independent rect. 5 6
199 298.46 atmosphere 1015.0 10 < th dose independent rect. 5 6
200 298.46 precipitation 0.1 10 < th dose independent rect. 5 6
202 298.46 precipitation 0.1 10 < th dose dependent rect. 5 6
209 298.55 humidity 50.0 30 > th dose dependent rect. 5 6
225 298.70 wind 9.0 10 < th dose independent rect. 11 18
229 298.77 radiation 10.0 270 < th dose dependent rect. 5 3
232 298.78 radiation 1.0 30 > th dose independent rect. 5 6
245 298.79 radiation 20.0 90 < th dose dependent rect. 8 1
248 298.83 wind 9.0 90 < th dose dependent rect. 15 19
268 299.12 temperature 25.0 270 < th dose independent rect. 23 2
336 299.54 temperature 15.0 10 > th dose dependent rect. 19 16
339 299.60 humidity 90.0 90 > th dose independent sin 23 NA
341 299.64 humidity 90.0 270 > th dose independent rect. 5 3
345 299.68 radiation 10.0 270 < th dose dependent rect. 5 12
355 299.76 temperature 10.0 90 > th dose dependent rect. 19 15
378 299.93 precipitation 0.1 90 < th dose independent rect. 10 11
387 299.93 precipitation 0.1 90 < th dose dependent rect. 10 11
398 300.00 precipitation 0.1 90 < th dose independent rect. 10 23
399 300.00 precipitation 0.1 90 < th dose dependent rect. 10 23
411 300.04 atmosphere 995.0 10 > th dose independent rect. 11 18
415 300.07 radiation 1.0 270 < th dose independent rect. 5 12
418 300.09 wind 5.0 90 < th dose independent rect. 15 19
422 300.12 temperature 10.0 1440 > th dose independent rect. 5 7
425 300.12 atmosphere 995.0 1440 > th dose independent rect. 5 7
426 300.12 temperature 10.0 1440 > th dose independent rect. 12 17
434 300.15 humidity 70.0 90 > th dose independent rect. 15 19
445 300.25 precipitation 0.1 90 < th dose independent rect. 10 9
447 300.25 precipitation 0.1 90 < th dose dependent rect. 10 9
467 300.38 humidity 60.0 90 > th dose independent rect. 17 17
471 300.39 wind 1.0 10 < th dose independent rect. 22 1
485 300.39 wind 1.0 10 < th dose dependent rect. 22 1
489 300.40 wind 5.0 30 < th dose independent rect. 14 21
503 300.44 atmosphere 995.0 10 > th dose dependent rect. 5 6
508 300.47 atmosphere 1015.0 10 < th dose independent rect. 11 18
530 300.59 precipitation 0.1 90 > th dose independent rect. 17 2
543 300.68 humidity 90.0 10 < th dose independent rect. 11 8
594 300.91 temperature 30.0 30 < th dose independent rect. 16 19
616 301.03 radiation 40.0 90 < th dose independent rect. 4 6
620 301.06 humidity 90.0 90 > th dose independent rect. 20 8
638 301.17 humidity 60.0 10 > th dose independent rect. 16 19
641 301.18 precipitation 0.1 90 > th dose dependent rect. 17 2
642 301.18 humidity 50.0 90 > th dose dependent rect. 17 17
646 301.20 temperature 30.0 30 < th dose independent rect. 14 21
656 301.24 humidity 50.0 90 > th dose dependent rect. 15 19
678 301.38 humidity 90.0 90 < th dose independent sin 23 NA
690 301.40 humidity 50.0 30 > th dose dependent rect. 14 21
692 301.42 radiation 1.0 30 < th dose dependent sin 7 NA
694 301.42 temperature 15.0 10 > th dose dependent rect. 21 14
704 301.47 precipitation 0.1 90 > th dose independent rect. 14 10
705 301.48 radiation 1.0 270 < th dose independent rect. 6 1
728 301.57 temperature 30.0 720 < th dose independent sin 13 NA
734 301.60 wind 1.0 30 < th dose independent rect. 15 8
737 301.61 temperature 30.0 720 > th dose independent sin 13 NA
744 301.64 temperature 30.0 720 > th dose independent rect. 15 4
774 301.74 radiation 40.0 270 < th dose dependent rect. 14 19
782 301.77 radiation 1.0 270 > th dose independent rect. 18 12
786 301.79 radiation 1.0 270 > th dose independent rect. 7 10
797 301.82 temperature 30.0 270 < th dose dependent rect. 18 10
802 301.83 temperature 30.0 30 < th dose dependent rect. 20 9
806 301.84 temperature 25.0 30 > th dose dependent rect. 23 1
812 301.88 precipitation 0.1 90 < th dose independent sin 19 NA
820 301.88 precipitation 0.1 90 < th dose dependent sin 19 NA
847 301.98 temperature 25.0 270 > th dose dependent rect. 19 2
851 302.00 wind 1.0 30 > th dose independent rect. 5 6
868 302.06 wind 5.0 90 < th dose independent rect. 21 13
881 302.09 radiation 10.0 90 < th dose independent rect. 8 1
910 302.17 temperature 30.0 720 > th dose independent rect. 12 7
928 302.18 temperature 25.0 270 < th dose independent rect. 10 16
977 302.32 precipitation 0.1 90 > th dose independent rect. 6 18
990 302.37 temperature 25.0 90 < th dose independent rect. 8 1