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Os01g0833000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein prenyltransferase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.5 (0.0336) R2 : 0.882
β1 : 0.811 (0.123) R2dD : 0.0117 R2D : 0.00558
β2 : 2.8 (0.117) R2dC : 0.27 R2C : 0.614
β3 : -2.83 (0.124) R2dE : 0.246 R2E : 0.591
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.292 (0.0719) R2dN8 : 0.00574 R2N8 : 0.0131
σ : 0.628
deviance : 181.75
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_____
C
peak time of C : 16.7
E
wheather : precipitation
threshold : 0.3689
memory length : 227
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 2.85
open length of G : 2.55

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
180.69 0.632 10.5 0.778 2.81 -2.76 -1.01 -0.611 -0.273 16.7 0.4824 234 2.93 2.4
180.72 0.626 10.5 0.842 2.77 -2.83 -0.955 -- -0.265 16.7 0.4999 226 2.9 2.53
181.66 0.628 10.5 0.824 2.8 -2.83 -- 0.214 -0.289 16.7 0.3656 227 2.85 2.54
181.75 0.628 10.5 0.811 2.8 -2.83 -- -- -0.292 16.7 0.3689 227 2.85 2.55
392.32 0.923 10.4 1.17 -- -4.19 -- 2.11 -0.0326 -- 0.2845 287 2.57 2.13
371.53 0.904 10.5 0.71 4.66 -- -0.512 -- -0.411 17.1 -- -- -- --
372.19 0.903 10.5 0.71 4.65 -- -- -- -0.413 17.1 -- -- -- --
377.77 0.905 10.4 0.897 -- -4.22 -- -- -0.0409 -- 2.312 293 2.23 2.58
199.09 0.657 10.5 -- 2.81 -2.84 -- -- -0.381 16.7 0.4266 224 2.84 2.65
1506.43 1.81 10.5 0.544 -- -- -- -- -0.531 -- -- -- -- --
385.47 0.918 10.6 -- 4.64 -- -- -- -0.492 17.1 -- -- -- --
384.93 0.914 10.4 -- -- -4.36 -- -- -0.285 -- 2.185 307 1.99 3.22
1514.24 1.82 10.5 -- -- -- -- -- -0.592 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 183.38 temperature 10.0 270 > th dose dependent rect. 2 4
2 187.40 wind 5.0 90 < th dose dependent rect. 3 4
3 187.91 temperature 10.0 270 > th dose dependent rect. 3 2
6 188.99 wind 9.0 270 < th dose dependent rect. 3 2
8 189.15 precipitation 0.1 270 < th dose independent rect. 3 2
9 189.15 precipitation 0.1 270 < th dose dependent rect. 3 2
14 191.98 precipitation 0.1 270 < th dose independent rect. 2 4
15 191.98 precipitation 0.1 270 < th dose dependent rect. 2 4
21 193.54 precipitation 0.1 270 < th dose independent rect. 6 19
22 193.54 precipitation 0.1 270 < th dose dependent rect. 6 19
26 193.99 wind 7.0 270 < th dose independent rect. 3 2
32 194.42 temperature 10.0 270 > th dose independent rect. 3 2
34 194.42 temperature 30.0 270 < th dose independent rect. 3 2
35 194.42 humidity 50.0 270 > th dose independent rect. 3 2
38 194.42 atmosphere 995.0 270 > th dose independent rect. 3 2
39 194.42 atmosphere 1010.0 270 < th dose independent rect. 3 2
41 194.42 radiation 20.0 270 < th dose independent rect. 3 2
44 194.42 temperature 10.0 270 > th dose independent rect. 5 22
47 194.50 radiation 40.0 270 < th dose dependent rect. 3 2
50 194.63 radiation 1.0 270 < th dose independent rect. 3 2
58 195.73 atmosphere 1010.0 270 < th dose independent rect. 2 4
59 195.79 wind 7.0 270 < th dose independent rect. 2 4
63 196.13 temperature 10.0 270 > th dose independent rect. 2 4
65 196.13 temperature 30.0 270 < th dose independent rect. 2 4
66 196.13 humidity 50.0 270 > th dose independent rect. 2 4
69 196.13 atmosphere 995.0 270 > th dose independent rect. 2 4
71 196.13 radiation 20.0 270 < th dose independent rect. 2 4
74 196.13 temperature 10.0 270 > th dose independent rect. 6 20
77 196.18 humidity 50.0 270 > th dose dependent rect. 3 2
117 197.17 wind 9.0 270 < th dose independent rect. 6 20
119 197.32 wind 9.0 270 < th dose independent rect. 5 22
183 204.70 wind 5.0 10 < th dose dependent rect. 4 4
228 209.56 wind 1.0 270 > th dose independent rect. 6 19
232 210.16 temperature 15.0 270 > th dose independent rect. 1 20
238 210.74 atmosphere 995.0 90 > th dose independent rect. 7 20
253 211.17 temperature 15.0 270 > th dose independent rect. 11 10
272 212.65 temperature 10.0 10 > th dose dependent rect. 3 5
341 216.12 wind 7.0 270 < th dose independent rect. 21 4
348 216.49 precipitation 0.1 270 < th dose independent rect. 21 4
349 216.49 precipitation 0.1 270 < th dose dependent rect. 21 4
350 216.55 radiation 30.0 270 < th dose independent rect. 15 15
352 216.66 radiation 1.0 270 < th dose dependent rect. 21 4
353 216.67 temperature 10.0 270 > th dose independent rect. 21 4
354 216.67 temperature 30.0 270 < th dose independent rect. 21 4
355 216.67 humidity 50.0 270 > th dose independent rect. 21 4
358 216.67 atmosphere 995.0 270 > th dose independent rect. 21 4
359 216.67 radiation 1.0 270 < th dose independent rect. 21 4
386 217.36 radiation 40.0 270 < th dose dependent rect. 15 15
390 217.66 atmosphere 1015.0 270 < th dose independent rect. 1 20
426 218.81 wind 9.0 270 < th dose independent rect. 21 14
428 218.82 temperature 10.0 270 > th dose independent rect. 21 14
429 218.82 atmosphere 995.0 270 > th dose independent rect. 21 14
455 219.21 wind 9.0 270 < th dose independent rect. 1 20
467 219.81 precipitation 0.1 270 < th dose independent rect. 1 20
468 219.81 precipitation 0.1 270 < th dose dependent rect. 1 20
469 219.83 precipitation 0.1 10 < th dose independent rect. 4 4
470 219.83 precipitation 0.1 10 < th dose dependent rect. 4 4
475 219.98 humidity 50.0 270 > th dose independent rect. 21 14
490 220.12 temperature 15.0 90 > th dose independent rect. 3 18
539 220.59 humidity 50.0 90 > th dose dependent rect. 21 6
554 220.78 atmosphere 1015.0 270 < th dose independent rect. 11 10
593 221.40 atmosphere 1015.0 90 < th dose independent rect. 3 18
599 221.44 atmosphere 995.0 270 > th dose dependent rect. 2 3
608 221.73 humidity 50.0 270 > th dose dependent rect. 21 4
623 222.57 atmosphere 1005.0 270 > th dose independent rect. 3 2
628 222.76 temperature 10.0 270 > th dose independent rect. 6 9
629 222.76 atmosphere 1015.0 270 < th dose independent rect. 6 9
630 222.76 temperature 10.0 270 > th dose independent rect. 15 15
631 222.81 wind 9.0 90 < th dose independent rect. 3 18
647 223.04 atmosphere 1015.0 270 < th dose independent rect. 6 19
649 223.20 atmosphere 1015.0 90 < th dose dependent rect. 3 4
665 223.43 precipitation 0.1 270 < th dose independent rect. 6 9
666 223.43 precipitation 0.1 270 < th dose dependent rect. 6 9
667 223.45 wind 9.0 270 < th dose independent rect. 6 9
675 223.57 atmosphere 1015.0 270 < th dose dependent rect. 3 2
683 223.69 wind 9.0 270 < th dose independent rect. 11 10
690 223.95 wind 1.0 270 > th dose independent rect. 3 1
698 224.19 wind 9.0 270 < th dose independent rect. 15 15
702 224.41 atmosphere 995.0 270 > th dose independent rect. 6 9
707 224.68 wind 9.0 270 < th dose dependent rect. 20 5
712 224.85 precipitation 0.1 270 < th dose independent rect. 19 7
713 224.85 precipitation 0.1 270 < th dose dependent rect. 19 7
717 224.96 precipitation 0.1 90 < th dose independent rect. 3 18
718 224.96 precipitation 0.1 90 < th dose dependent rect. 3 18
726 225.12 atmosphere 995.0 270 > th dose independent rect. 1 19
771 226.02 wind 9.0 270 < th dose independent rect. 19 7
780 226.25 wind 1.0 270 > th dose independent rect. 21 4
781 226.26 atmosphere 995.0 270 > th dose dependent rect. 1 5
783 226.28 temperature 10.0 270 > th dose independent rect. 19 7
784 226.28 temperature 30.0 270 < th dose independent rect. 19 7
785 226.28 humidity 50.0 270 > th dose independent rect. 19 7
786 226.28 atmosphere 995.0 270 > th dose independent rect. 19 7
787 226.28 radiation 1.0 270 < th dose independent rect. 19 7
794 226.28 radiation 1.0 270 < th dose dependent rect. 19 7
838 226.94 radiation 1.0 270 < th dose dependent rect. 2 17
949 228.49 precipitation 0.1 270 < th dose independent rect. 21 14
950 228.49 precipitation 0.1 270 < th dose dependent rect. 21 14
966 229.02 wind 1.0 270 > th dose independent rect. 11 10
969 229.11 atmosphere 995.0 90 > th dose independent rect. 3 18
982 229.51 precipitation 0.1 270 < th dose independent rect. 15 15
983 229.51 precipitation 0.1 270 < th dose dependent rect. 15 15
987 229.61 wind 3.0 90 < th dose dependent rect. 3 10
997 229.85 humidity 50.0 270 > th dose independent rect. 6 19