Os01g0832900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Ser-Thr protein kinase-like protein.
FiT-DB / Search/ Help/ Sample detail
|
Os01g0832900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Ser-Thr protein kinase-like protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 150.67 | 0.577 | 8.95 | -1.92 | 1.26 | -3.21 | -3.85 | 5.71 | -0.513 | 9.64 | 7.861 | 845 | -- | -- |
| 160.21 | 0.59 | 8.97 | -1.84 | 1.29 | -1.8 | -2.82 | -- | -0.498 | 13.8 | 15.45 | 995 | -- | -- |
| 185.36 | 0.634 | 8.94 | -2.03 | 0.898 | -2.97 | -- | 3.54 | -0.448 | 8.14 | 5.807 | 724 | -- | -- |
| 191.46 | 0.644 | 8.93 | -1.77 | 1.4 | -2.48 | -- | -- | -0.42 | 12.5 | 8.284 | 1002 | -- | -- |
| 175.82 | 0.618 | 9.01 | -2.2 | -- | -2.58 | -- | 4.25 | -0.695 | -- | 7.202 | 1949 | -- | -- |
| 204.72 | 0.671 | 8.95 | -1.77 | 1.58 | -- | -2.89 | -- | -0.309 | 16.1 | -- | -- | -- | -- |
| 226.39 | 0.705 | 8.96 | -1.81 | 1.59 | -- | -- | -- | -0.325 | 16.5 | -- | -- | -- | -- |
| 200.33 | 0.659 | 9.01 | -1.89 | -- | -2.59 | -- | -- | -0.628 | -- | 6.624 | 2015 | -- | -- |
| 281.65 | 0.782 | 8.92 | -- | 1.36 | -2.42 | -- | -- | -0.296 | 12.5 | 10 | 982 | -- | -- |
| 361.36 | 0.888 | 8.95 | -1.87 | -- | -- | -- | -- | -0.367 | -- | -- | -- | -- | -- |
| 312.4 | 0.827 | 8.92 | -- | 1.62 | -- | -- | -- | -0.124 | 16.5 | -- | -- | -- | -- |
| 281.61 | 0.782 | 8.97 | -- | -- | -2.77 | -- | -- | -0.442 | -- | 10 | 2004 | -- | -- |
| 453.41 | 0.994 | 8.9 | -- | -- | -- | -- | -- | -0.16 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 153.46 | radiation | 20 | 720 | < th | dose dependent | rect. | 15 | 17 |
| 2 | 153.49 | temperature | 20 | 720 | < th | dose independent | rect. | 4 | 3 |
| 4 | 154.20 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 6 |
| 8 | 154.91 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 2 |
| 9 | 154.99 | temperature | 25 | 270 | < th | dose independent | rect. | 9 | 2 |
| 10 | 155.08 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 4 |
| 17 | 155.64 | radiation | 10 | 720 | < th | dose dependent | rect. | 1 | 23 |
| 19 | 156.07 | radiation | 10 | 720 | < th | dose dependent | rect. | 5 | 19 |
| 22 | 156.28 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 26 | 156.56 | humidity | 70 | 1440 | > th | dose independent | rect. | 19 | 18 |
| 27 | 156.71 | radiation | 10 | 720 | < th | dose dependent | rect. | 3 | 21 |
| 29 | 156.83 | humidity | 70 | 1440 | < th | dose independent | rect. | 18 | 19 |
| 37 | 157.27 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 5 |
| 38 | 157.30 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 7 |
| 55 | 157.76 | radiation | 20 | 720 | < th | dose dependent | sin | 12 | NA |
| 56 | 157.77 | humidity | 70 | 1440 | > th | dose independent | rect. | 6 | 7 |
| 64 | 157.87 | humidity | 70 | 1440 | > th | dose independent | rect. | 24 | 13 |
| 65 | 157.87 | humidity | 70 | 1440 | > th | dose independent | rect. | 22 | 15 |
| 76 | 158.05 | radiation | 1 | 1440 | > th | dose dependent | rect. | 15 | 21 |
| 78 | 158.18 | radiation | 10 | 720 | < th | dose dependent | rect. | 19 | 23 |
| 80 | 158.19 | radiation | 10 | 720 | < th | dose dependent | rect. | 11 | 22 |
| 84 | 158.27 | humidity | 70 | 1440 | < th | dose independent | sin | 9 | NA |
| 90 | 158.37 | radiation | 20 | 1440 | < th | dose independent | rect. | 15 | 17 |
| 100 | 158.56 | humidity | 70 | 1440 | > th | dose independent | sin | 8 | NA |
| 101 | 158.56 | radiation | 10 | 720 | < th | dose dependent | rect. | 9 | 23 |
| 102 | 158.61 | humidity | 80 | 1440 | < th | dose dependent | rect. | 6 | 7 |
| 109 | 158.66 | radiation | 10 | 720 | < th | dose dependent | rect. | 15 | 23 |
| 113 | 158.71 | radiation | 1 | 1440 | > th | dose dependent | rect. | 15 | 17 |
| 134 | 158.98 | humidity | 70 | 1440 | < th | dose independent | rect. | 6 | 7 |
| 167 | 159.13 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 4 |
| 168 | 159.13 | radiation | 40 | 1440 | < th | dose dependent | rect. | 15 | 21 |
| 169 | 159.14 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 200 | 159.42 | radiation | 40 | 1440 | > th | dose dependent | rect. | 14 | 21 |
| 212 | 159.53 | humidity | 80 | 1440 | < th | dose dependent | sin | 6 | NA |
| 219 | 159.63 | radiation | 10 | 720 | < th | dose dependent | no | NA | NA |
| 227 | 159.77 | radiation | 1 | 1440 | > th | dose dependent | sin | 12 | NA |
| 228 | 159.78 | radiation | 10 | 720 | < th | dose dependent | rect. | 21 | 23 |
| 232 | 159.85 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 16 |
| 239 | 159.95 | radiation | 1 | 1440 | > th | dose dependent | rect. | 16 | 15 |
| 243 | 159.99 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 1 |
| 244 | 159.99 | temperature | 15 | 720 | > th | dose dependent | rect. | 3 | 3 |
| 270 | 160.27 | radiation | 20 | 720 | < th | dose independent | sin | 12 | NA |
| 291 | 160.46 | humidity | 70 | 1440 | < th | dose independent | rect. | 9 | 4 |
| 297 | 160.50 | radiation | 10 | 720 | < th | dose dependent | rect. | 5 | 23 |
| 317 | 160.68 | radiation | 10 | 720 | < th | dose independent | rect. | 21 | 10 |
| 325 | 160.80 | radiation | 40 | 1440 | > th | dose independent | rect. | 14 | 22 |
| 339 | 160.94 | radiation | 1 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 360 | 161.11 | radiation | 40 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 363 | 161.12 | radiation | 40 | 1440 | < th | dose independent | rect. | 10 | 2 |
| 377 | 161.21 | radiation | 20 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 403 | 161.49 | radiation | 40 | 1440 | > th | dose independent | rect. | 9 | 3 |
| 407 | 161.52 | radiation | 40 | 1440 | > th | dose dependent | rect. | 9 | 2 |
| 448 | 161.72 | radiation | 10 | 720 | < th | dose dependent | rect. | 23 | 23 |
| 463 | 161.85 | radiation | 10 | 720 | < th | dose independent | rect. | 23 | 8 |
| 472 | 161.91 | radiation | 30 | 1440 | > th | dose dependent | rect. | 8 | 4 |
| 481 | 161.96 | radiation | 30 | 1440 | < th | dose independent | rect. | 14 | 22 |
| 502 | 162.02 | radiation | 20 | 270 | < th | dose independent | rect. | 10 | 22 |
| 510 | 162.10 | radiation | 40 | 1440 | > th | dose dependent | sin | 12 | NA |
| 539 | 162.33 | humidity | 50 | 1440 | > th | dose dependent | rect. | 7 | 6 |
| 598 | 162.60 | humidity | 50 | 1440 | > th | dose dependent | rect. | 5 | 8 |
| 654 | 162.67 | radiation | 20 | 1440 | > th | dose independent | rect. | 15 | 21 |
| 749 | 163.17 | radiation | 40 | 1440 | > th | dose independent | sin | 11 | NA |
| 805 | 163.40 | radiation | 40 | 1440 | < th | dose independent | rect. | 6 | 6 |
| 815 | 163.42 | radiation | 10 | 720 | < th | dose dependent | rect. | 3 | 14 |
| 846 | 163.54 | radiation | 40 | 1440 | < th | dose independent | rect. | 24 | 12 |
| 847 | 163.54 | radiation | 40 | 1440 | < th | dose independent | rect. | 22 | 14 |
| 869 | 163.71 | radiation | 30 | 1440 | > th | dose dependent | sin | 7 | NA |
| 871 | 163.72 | radiation | 20 | 1440 | > th | dose independent | sin | 12 | NA |
| 897 | 163.84 | radiation | 10 | 270 | < th | dose independent | rect. | 1 | 23 |
| 914 | 163.92 | radiation | 1 | 720 | < th | dose independent | rect. | 15 | 9 |
| 949 | 164.17 | radiation | 10 | 270 | < th | dose independent | rect. | 13 | 21 |