Os01g0832300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase domain containing protein.
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Os01g0832300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 130.89 | 0.538 | 10.4 | -3.94 | 0.548 | 2.55 | 0.47 | -4.61 | -0.638 | 3.9 | 25.34 | 1194 | -- | -- |
| 137.35 | 0.546 | 10.2 | -2.81 | 0.563 | 2.08 | 0.2 | -- | -0.365 | 3.83 | 25.38 | 1205 | -- | -- |
| 131.36 | 0.534 | 10.4 | -3.89 | 0.553 | 2.49 | -- | -4.32 | -0.619 | 3.44 | 25.4 | 1215 | -- | -- |
| 137.11 | 0.545 | 10.2 | -2.82 | 0.565 | 2.03 | -- | -- | -0.358 | 3.17 | 25.4 | 1231 | -- | -- |
| 146.98 | 0.565 | 10.4 | -3.9 | -- | 2.68 | -- | -4.21 | -0.689 | -- | 24.85 | 1194 | -- | -- |
| 288.89 | 0.797 | 10.2 | -2.17 | 0.901 | -- | 0.399 | -- | -0.167 | 2.48 | -- | -- | -- | -- |
| 289.44 | 0.797 | 10.2 | -2.19 | 0.9 | -- | -- | -- | -0.169 | 2.4 | -- | -- | -- | -- |
| 153.51 | 0.577 | 10.3 | -2.85 | -- | 2.24 | -- | -- | -0.403 | -- | 24.99 | 1197 | -- | -- |
| 328.12 | 0.844 | 10.1 | -- | 0.631 | 1.34 | -- | -- | 0.244 | 2.95 | 28.3 | 1216 | -- | -- |
| 337.34 | 0.858 | 10.2 | -2.15 | -- | -- | -- | -- | -0.147 | -- | -- | -- | -- | -- |
| 415.32 | 0.953 | 10.1 | -- | 0.858 | -- | -- | -- | 0.0742 | 2.36 | -- | -- | -- | -- |
| 350.22 | 0.872 | 10.1 | -- | -- | 1.53 | -- | -- | 0.203 | -- | 27.7 | 1203 | -- | -- |
| 458.97 | 1 | 10.1 | -- | -- | -- | -- | -- | 0.0912 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 138.90 | temperature | 25 | 1440 | > th | dose dependent | rect. | 7 | 16 |
| 18 | 139.18 | temperature | 25 | 1440 | > th | dose dependent | sin | 21 | NA |
| 34 | 139.33 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 80 | 139.72 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 23 |
| 96 | 139.84 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 102 | 139.87 | temperature | 25 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 169 | 140.55 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 10 |
| 221 | 141.61 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 232 | 141.81 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 4 |
| 267 | 142.49 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 339 | 145.71 | temperature | 25 | 720 | > th | dose dependent | sin | 11 | NA |
| 345 | 145.91 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 399 | 150.06 | wind | 5 | 43200 | > th | dose independent | rect. | 3 | 13 |
| 400 | 150.08 | wind | 5 | 43200 | < th | dose independent | rect. | 3 | 13 |
| 417 | 150.82 | wind | 5 | 43200 | < th | dose independent | rect. | 24 | 16 |
| 427 | 150.97 | wind | 3 | 43200 | > th | dose dependent | rect. | 3 | 12 |
| 429 | 151.02 | wind | 5 | 43200 | < th | dose independent | sin | 3 | NA |
| 435 | 151.09 | wind | 5 | 43200 | < th | dose independent | rect. | 5 | 10 |
| 447 | 151.31 | wind | 5 | 43200 | > th | dose independent | rect. | 5 | 10 |
| 452 | 151.43 | wind | 5 | 43200 | > th | dose independent | sin | 3 | NA |
| 465 | 151.66 | wind | 5 | 43200 | < th | dose independent | rect. | 19 | 21 |
| 481 | 151.90 | wind | 5 | 43200 | > th | dose dependent | rect. | 19 | 21 |
| 493 | 152.09 | wind | 5 | 43200 | > th | dose independent | rect. | 19 | 21 |
| 518 | 152.25 | humidity | 70 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 525 | 152.32 | wind | 5 | 43200 | > th | dose dependent | rect. | 24 | 16 |
| 577 | 152.80 | temperature | 10 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 593 | 152.86 | humidity | 70 | 14400 | < th | dose independent | rect. | 18 | 13 |
| 598 | 152.88 | wind | 5 | 43200 | > th | dose dependent | sin | 3 | NA |
| 617 | 153.12 | humidity | 70 | 14400 | < th | dose independent | rect. | 18 | 4 |
| 665 | 153.57 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 16 |
| 666 | 153.58 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 14 |
| 669 | 153.59 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 10 |
| 673 | 153.60 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 8 |
| 678 | 153.61 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 20 |
| 730 | 153.80 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 22 |
| 742 | 153.85 | temperature | 30 | 1440 | < th | dose independent | sin | 18 | NA |
| 757 | 153.96 | temperature | 30 | 1440 | > th | dose independent | sin | 16 | NA |
| 767 | 154.01 | temperature | 30 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 801 | 154.15 | temperature | 30 | 1440 | > th | dose independent | rect. | 13 | 6 |
| 841 | 154.21 | wind | 5 | 43200 | > th | dose dependent | rect. | 9 | 5 |
| 877 | 154.36 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 23 |
| 880 | 154.37 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 14 |
| 881 | 154.38 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 12 |
| 886 | 154.40 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 8 |
| 897 | 154.42 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 18 |
| 906 | 154.47 | temperature | 10 | 1440 | > th | dose dependent | rect. | 15 | 3 |
| 912 | 154.50 | radiation | 30 | 14400 | > th | dose independent | rect. | 16 | 16 |
| 930 | 154.64 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 7 |