Os01g0830000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Plastid sufB (Fragment).
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Os01g0830000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Plastid sufB (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 69.81 | 0.393 | 13.4 | 0.115 | 1.85 | -0.724 | 0.785 | -0.85 | -0.391 | 7.43 | 21.3 | 1392 | -- | -- |
| 71.08 | 0.393 | 13.3 | 0.253 | 1.85 | -0.571 | 0.804 | -- | -0.337 | 7.37 | 22.2 | 1319 | -- | -- |
| 71.5 | 0.394 | 13.4 | 0.126 | 1.84 | -0.717 | -- | -0.85 | -0.394 | 7.41 | 21.3 | 1380 | -- | -- |
| 72.85 | 0.398 | 13.3 | 0.268 | 1.84 | -0.567 | -- | -- | -0.338 | 7.36 | 22.2 | 1303 | -- | -- |
| 161.87 | 0.593 | 13.5 | 0.366 | -- | -1.34 | -- | 0.0917 | -0.368 | -- | 26.55 | 528 | -- | -- |
| 83.46 | 0.428 | 13.4 | 0.0541 | 1.84 | -- | 0.805 | -- | -0.526 | 7.48 | -- | -- | -- | -- |
| 85.24 | 0.432 | 13.4 | 0.0725 | 1.84 | -- | -- | -- | -0.528 | 7.46 | -- | -- | -- | -- |
| 155.37 | 0.581 | 13.3 | 0.486 | -- | -1.43 | -- | -- | -0.148 | -- | 26.4 | 532 | -- | -- |
| 74.66 | 0.402 | 13.3 | -- | 1.86 | -0.506 | -- | -- | -0.379 | 7.36 | 22.4 | 1301 | -- | -- |
| 266.42 | 0.763 | 13.4 | 0.101 | -- | -- | -- | -- | -0.499 | -- | -- | -- | -- | -- |
| 85.38 | 0.432 | 13.4 | -- | 1.84 | -- | -- | -- | -0.536 | 7.45 | -- | -- | -- | -- |
| 162.15 | 0.593 | 13.4 | -- | -- | -1.38 | -- | -- | -0.239 | -- | 26.6 | 526 | -- | -- |
| 266.69 | 0.762 | 13.4 | -- | -- | -- | -- | -- | -0.51 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 66.12 | temperature | 25.0 | 270 | > th | dose independent | rect. | 14 | 5 |
| 3 | 67.44 | humidity | 60.0 | 30 | > th | dose dependent | rect. | 18 | 1 |
| 6 | 67.52 | temperature | 25.0 | 270 | > th | dose independent | rect. | 15 | 2 |
| 10 | 67.69 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 18 | 1 |
| 11 | 67.72 | temperature | 30.0 | 30 | < th | dose independent | rect. | 18 | 1 |
| 16 | 67.94 | humidity | 70.0 | 30 | > th | dose independent | rect. | 18 | 1 |
| 21 | 68.55 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 18 | 1 |
| 22 | 68.57 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 23 | 68.64 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 25 | 68.71 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 23 | 8 |
| 27 | 68.76 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 23 | 8 |
| 38 | 68.93 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 49 | 69.05 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 23 | 5 |
| 53 | 69.07 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 1 | 2 |
| 64 | 69.13 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 94 | 69.26 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 2 | 1 |
| 116 | 69.39 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 14 | 5 |
| 121 | 69.41 | humidity | 50.0 | 270 | > th | dose independent | rect. | 14 | 5 |
| 141 | 69.49 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 14 | 18 |
| 172 | 69.62 | temperature | 20.0 | 1440 | > th | dose independent | sin | 9 | NA |
| 198 | 69.69 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 13 | 20 |
| 201 | 69.71 | temperature | 20.0 | 1440 | < th | dose independent | sin | 9 | NA |
| 271 | 69.88 | wind | 1.0 | 270 | > th | dose independent | rect. | 19 | 19 |
| 308 | 69.99 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 16 | 3 |
| 341 | 70.06 | temperature | 25.0 | 1440 | < th | dose dependent | sin | 10 | NA |
| 413 | 70.21 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 430 | 70.23 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 445 | 70.27 | humidity | 90.0 | 270 | < th | dose independent | rect. | 14 | 5 |
| 451 | 70.28 | temperature | 20.0 | 10 | > th | dose independent | rect. | 16 | 4 |
| 466 | 70.30 | temperature | 30.0 | 270 | < th | dose independent | rect. | 19 | 19 |
| 477 | 70.32 | humidity | 90.0 | 270 | < th | dose independent | rect. | 15 | 2 |
| 509 | 70.38 | wind | 9.0 | 270 | < th | dose independent | rect. | 14 | 5 |
| 528 | 70.40 | temperature | 20.0 | 270 | > th | dose independent | rect. | 14 | 18 |
| 536 | 70.41 | wind | 1.0 | 90 | > th | dose independent | rect. | 19 | 21 |
| 547 | 70.44 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 19 | 19 |
| 550 | 70.44 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 19 | 19 |
| 570 | 70.49 | temperature | 20.0 | 30 | > th | dose independent | rect. | 16 | 19 |
| 588 | 70.52 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 16 | 19 |
| 592 | 70.53 | humidity | 50.0 | 270 | > th | dose independent | rect. | 14 | 18 |
| 599 | 70.55 | radiation | 40.0 | 270 | < th | dose independent | rect. | 14 | 5 |
| 602 | 70.55 | temperature | 15.0 | 270 | > th | dose independent | rect. | 19 | 19 |
| 603 | 70.55 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 15 | 4 |
| 631 | 70.59 | wind | 3.0 | 30 | > th | dose dependent | rect. | 18 | 1 |
| 637 | 70.60 | radiation | 1.0 | 270 | > th | dose independent | rect. | 8 | 6 |
| 654 | 70.62 | radiation | 40.0 | 270 | < th | dose independent | rect. | 14 | 18 |
| 662 | 70.63 | wind | 9.0 | 270 | < th | dose independent | rect. | 19 | 19 |
| 677 | 70.65 | temperature | 10.0 | 270 | > th | dose independent | rect. | 14 | 5 |
| 679 | 70.65 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 14 | 5 |
| 684 | 70.65 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 19 | 19 |
| 711 | 70.69 | wind | 1.0 | 270 | > th | dose dependent | rect. | 15 | 2 |
| 749 | 70.75 | wind | 9.0 | 270 | < th | dose independent | rect. | 14 | 18 |
| 756 | 70.76 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 14 | 5 |
| 829 | 70.87 | temperature | 15.0 | 270 | > th | dose independent | rect. | 8 | 6 |
| 857 | 70.90 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 15 | 2 |
| 861 | 70.91 | wind | 9.0 | 270 | < th | dose independent | rect. | 8 | 6 |
| 876 | 70.93 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 8 | 6 |
| 877 | 70.93 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 8 | 6 |
| 878 | 70.93 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 8 | 6 |
| 881 | 70.93 | temperature | 10.0 | 270 | > th | dose independent | rect. | 14 | 18 |
| 882 | 70.93 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 8 | 6 |
| 884 | 70.93 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 4 | 16 |
| 899 | 70.95 | wind | 1.0 | 270 | > th | dose independent | rect. | 14 | 5 |
| 921 | 70.97 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 8 | 17 |
| 942 | 71.00 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 17 | 22 |
| 945 | 71.00 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 17 | 22 |
| 987 | 71.05 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 16 | 3 |
| 998 | 71.06 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 14 | 5 |