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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0829900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Oligopeptide transporter OPT superfamily protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.06 (0.0362) R2 : 4.48e-05
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0109 (0.0763) R2dN8 : 5.78e-05 R2N8 : 4.48e-05
σ : 0.682
deviance : 213.67
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
184.92 0.633 3.26 0.362 0.0728 98.9 0.35 217 -0.00564 8.71 70 10 7 1
208.89 0.678 3.05 -0.105 0.114 1.78 0.484 -- -0.0169 8.34 70 10 7 1
185.31 0.634 3.26 0.372 0.0722 98.9 -- 217 -0.00582 9.25 70 10 7.01 0.992
200.91 0.66 3.07 -0.143 0.0609 1.97 -- -- -0.0562 8.37 80 10 7.15 1.27
185.61 0.638 7.28 9.37 -- 1950 -- 4360 -0.00502 -- 70.03 11 7.01 0.99
211.95 0.683 3.06 -0.133 0.128 -- 0.361 -- -0.0255 8.51 -- -- -- --
212.37 0.682 3.06 -0.122 0.128 -- -- -- -0.0256 8.52 -- -- -- --
199.27 0.657 3.05 -0.0866 -- 3.06 -- -- 0.00067 -- 79.91 14 7.21 0.951
197.97 0.655 3.05 -- 0.0663 3.13 -- -- 0.00472 9.05 80.11 14 7.9 0.0166
213.28 0.682 3.06 -0.121 -- -- -- -- -0.0243 -- -- -- -- --
212.76 0.682 3.05 -- 0.127 -- -- -- -0.012 8.59 -- -- -- --
198.23 0.656 3.05 -- -- 3.25 -- -- 0.00888 -- 80 16 7.89 0.00618
213.67 0.682 3.06 -- -- -- -- -- -0.0109 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 184.92 humidity 70.0 10 < th dose independent rect. 7 1
61 184.92 humidity 70.0 10 < th dose dependent rect. 7 1
121 187.87 atmosphere 1000.0 10 < th dose independent rect. 7 1
128 187.87 atmosphere 1000.0 10 < th dose dependent rect. 7 1
143 188.01 wind 1.0 10 < th dose dependent rect. 7 1
144 188.06 wind 1.0 10 < th dose independent rect. 7 1
150 193.51 temperature 25.0 90 > th dose independent rect. 1 1
157 195.13 humidity 90.0 90 < th dose independent rect. 1 2
158 195.27 radiation 30.0 30 > th dose independent rect. 7 1
229 196.18 temperature 25.0 90 > th dose dependent rect. 1 1
234 196.48 radiation 1.0 90 < th dose independent rect. 8 6
235 196.48 radiation 1.0 90 < th dose dependent rect. 8 6
238 196.85 radiation 1.0 10 < th dose independent rect. 13 1
248 196.85 radiation 1.0 10 < th dose dependent rect. 13 1
263 197.45 temperature 15.0 10 > th dose independent rect. 3 23
270 198.08 humidity 80.0 90 > th dose dependent rect. 12 1
272 198.12 humidity 80.0 90 > th dose independent rect. 12 1
274 198.20 atmosphere 1000.0 90 > th dose independent rect. 3 8
275 198.22 atmosphere 1005.0 90 > th dose dependent rect. 1 2
277 198.38 atmosphere 1015.0 10 < th dose dependent rect. 2 1
307 199.01 radiation 20.0 30 > th dose dependent rect. 7 1
322 199.12 wind 3.0 10 < th dose independent rect. 2 1
327 199.20 wind 1.0 30 < th dose dependent rect. 2 1
330 199.26 wind 5.0 10 < th dose dependent rect. 2 1
333 199.29 wind 9.0 10 < th dose independent rect. 2 1
334 199.29 temperature 10.0 10 > th dose independent rect. 2 1
336 199.29 temperature 30.0 10 < th dose independent rect. 2 1
337 199.29 humidity 50.0 10 > th dose independent rect. 2 1
340 199.29 atmosphere 995.0 10 > th dose independent rect. 2 1
341 199.29 atmosphere 1010.0 10 < th dose independent rect. 2 1
343 199.29 radiation 1.0 10 < th dose independent rect. 2 1
348 199.29 precipitation 0.1 10 < th dose independent rect. 2 1
350 199.29 radiation 1.0 10 < th dose dependent rect. 2 1
355 199.29 precipitation 0.1 10 < th dose dependent rect. 2 1
357 199.32 temperature 10.0 10 > th dose dependent rect. 2 1
365 199.51 temperature 30.0 10 < th dose dependent rect. 2 1
366 199.61 temperature 25.0 30 > th dose dependent rect. 24 8
368 199.72 humidity 50.0 10 > th dose dependent rect. 2 1
400 200.01 radiation 30.0 90 < th dose dependent rect. 12 15
418 200.06 wind 1.0 30 > th dose independent rect. 2 1
420 200.06 wind 9.0 30 < th dose independent rect. 3 23
460 200.20 atmosphere 1000.0 10 > th dose independent rect. 3 23
465 200.26 atmosphere 1005.0 10 > th dose independent rect. 2 1
469 200.31 atmosphere 1000.0 90 < th dose independent rect. 6 5
525 200.76 atmosphere 1000.0 90 < th dose independent rect. 24 11
537 200.94 atmosphere 1000.0 270 < th dose independent rect. 4 1
538 200.94 atmosphere 1000.0 270 < th dose dependent rect. 4 1
542 200.97 radiation 1.0 90 < th dose dependent rect. 8 19
543 200.98 atmosphere 1000.0 10 > th dose independent rect. 4 8
544 200.98 radiation 1.0 90 < th dose dependent rect. 12 15
568 201.15 humidity 60.0 90 > th dose dependent rect. 12 15
569 201.18 radiation 1.0 90 < th dose independent rect. 8 19
571 201.19 radiation 1.0 90 < th dose independent rect. 12 15
610 201.27 atmosphere 995.0 90 > th dose dependent rect. 3 8
638 201.65 atmosphere 1000.0 10 < th dose independent rect. 7 5
642 201.72 atmosphere 1000.0 10 < th dose independent rect. 1 11
648 201.78 radiation 20.0 90 < th dose independent rect. 12 15
676 201.91 humidity 90.0 90 < th dose independent rect. 24 14
696 202.02 humidity 90.0 90 < th dose independent rect. 24 16
713 202.13 wind 1.0 30 > th dose dependent rect. 2 1
719 202.16 radiation 30.0 10 < th dose independent rect. 3 8
726 202.20 atmosphere 1000.0 90 > th dose independent rect. 3 16
735 202.27 humidity 70.0 10 > th dose independent rect. 3 6
747 202.35 humidity 80.0 10 > th dose independent rect. 14 1
750 202.37 radiation 20.0 30 < th dose independent rect. 3 6
763 202.47 humidity 80.0 90 > th dose independent rect. 12 15
764 202.49 radiation 40.0 90 < th dose independent rect. 11 16
772 202.56 humidity 90.0 90 < th dose dependent rect. 1 1
782 202.60 humidity 70.0 90 > th dose dependent rect. 3 9
810 202.66 humidity 80.0 90 > th dose independent rect. 3 5
814 202.67 atmosphere 1000.0 10 < th dose independent rect. 1 9
837 202.71 humidity 50.0 90 > th dose dependent rect. 3 8
867 202.82 radiation 30.0 10 < th dose dependent rect. 4 7
890 202.97 humidity 70.0 10 > th dose independent rect. 13 14
899 202.99 atmosphere 1000.0 10 > th dose independent rect. 4 16
907 203.02 atmosphere 995.0 720 < th dose independent rect. 14 1
948 203.02 atmosphere 995.0 720 < th dose dependent rect. 14 1