Os01g0829700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0829700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 115.57 | 0.505 | 3.61 | 0.234 | 0.703 | 4.78 | 0.585 | 9.1 | -0.039 | 19.3 | 0.9338 | 3900 | 16 | 1.04 |
| 131.74 | 0.535 | 3.52 | 0.372 | 0.615 | 2.34 | 0.259 | -- | 0.161 | 18.6 | 1.291 | 2566 | 16.7 | 0.533 |
| 116.45 | 0.503 | 3.61 | 0.221 | 0.705 | 4.84 | -- | 9.24 | -0.0381 | 19.3 | 0.9064 | 3900 | 16 | 0.996 |
| 127.98 | 0.527 | 3.51 | 0.375 | 0.717 | 2.26 | -- | -- | 0.0783 | 19.4 | 1.1 | 2551 | 16.7 | 0.59 |
| 142.66 | 0.556 | 3.59 | 0.206 | -- | 4.99 | -- | 9.62 | -0.0501 | -- | 0.8769 | 3854 | 16 | 0.982 |
| 147.26 | 0.569 | 3.59 | 0.227 | 0.725 | -- | 0.895 | -- | -0.075 | 19.7 | -- | -- | -- | -- |
| 149.49 | 0.573 | 3.58 | 0.205 | 0.728 | -- | -- | -- | -0.0731 | 19.6 | -- | -- | -- | -- |
| 153.5 | 0.577 | 3.53 | 0.243 | -- | 2.33 | -- | -- | -0.0107 | -- | 1.2 | 1868 | 16.7 | 0.6 |
| 129.03 | 0.529 | 3.57 | -- | 0.72 | 2.11 | -- | -- | 0.0147 | 19.5 | 1.199 | 2494 | 16.7 | 0.585 |
| 177.93 | 0.623 | 3.57 | 0.195 | -- | -- | -- | -- | -0.0843 | -- | -- | -- | -- | -- |
| 150.6 | 0.574 | 3.59 | -- | 0.727 | -- | -- | -- | -0.096 | 19.6 | -- | -- | -- | -- |
| 148.57 | 0.568 | 3.57 | -- | -- | 3.87 | -- | -- | -0.0805 | -- | 1.354 | 418 | 16.6 | 0.616 |
| 178.93 | 0.624 | 3.57 | -- | -- | -- | -- | -- | -0.106 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 116.72 | wind | 1 | 4320 | < th | dose dependent | rect. | 16 | 1 |
| 3 | 118.95 | wind | 1 | 4320 | < th | dose independent | rect. | 16 | 1 |
| 5 | 119.69 | wind | 1 | 270 | < th | dose dependent | rect. | 17 | 3 |
| 6 | 119.79 | wind | 1 | 270 | < th | dose independent | rect. | 17 | 3 |
| 7 | 119.86 | wind | 1 | 720 | < th | dose independent | rect. | 17 | 1 |
| 37 | 121.99 | wind | 9 | 4320 | > th | dose independent | rect. | 3 | 1 |
| 69 | 121.99 | wind | 9 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 110 | 123.97 | wind | 1 | 4320 | > th | dose independent | rect. | 16 | 1 |
| 128 | 127.49 | wind | 1 | 43200 | > th | dose independent | rect. | 16 | 14 |
| 132 | 127.68 | wind | 1 | 43200 | < th | dose independent | rect. | 19 | 10 |
| 134 | 127.81 | wind | 1 | 43200 | > th | dose independent | rect. | 19 | 10 |
| 137 | 127.87 | wind | 1 | 43200 | < th | dose independent | rect. | 16 | 13 |
| 139 | 127.95 | wind | 1 | 43200 | < th | dose independent | rect. | 14 | 16 |
| 179 | 128.65 | wind | 1 | 43200 | > th | dose independent | sin | 12 | NA |
| 193 | 128.79 | wind | 1 | 43200 | < th | dose independent | sin | 12 | NA |
| 266 | 129.76 | wind | 1 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 270 | 129.83 | wind | 3 | 43200 | < th | dose dependent | rect. | 17 | 13 |
| 313 | 130.08 | wind | 1 | 43200 | < th | dose dependent | rect. | 2 | 22 |
| 326 | 130.16 | wind | 1 | 43200 | < th | dose dependent | rect. | 14 | 18 |
| 330 | 130.18 | wind | 1 | 1440 | > th | dose independent | rect. | 19 | 1 |
| 343 | 130.26 | wind | 1 | 43200 | > th | dose independent | rect. | 9 | 22 |
| 347 | 130.28 | wind | 3 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 376 | 130.41 | wind | 1 | 43200 | < th | dose independent | rect. | 2 | 22 |
| 384 | 130.44 | wind | 3 | 43200 | < th | dose dependent | sin | 12 | NA |
| 410 | 130.55 | wind | 1 | 43200 | > th | dose independent | rect. | 2 | 21 |
| 443 | 130.70 | wind | 3 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 546 | 130.99 | wind | 1 | 43200 | < th | dose independent | no | NA | NA |
| 554 | 131.01 | wind | 1 | 43200 | < th | dose dependent | rect. | 22 | 7 |
| 555 | 131.01 | wind | 1 | 43200 | < th | dose dependent | rect. | 22 | 10 |
| 570 | 131.05 | wind | 1 | 43200 | < th | dose independent | rect. | 22 | 23 |
| 572 | 131.05 | wind | 1 | 43200 | < th | dose dependent | rect. | 4 | 17 |
| 586 | 131.10 | wind | 1 | 43200 | > th | dose independent | no | NA | NA |
| 697 | 131.47 | wind | 1 | 43200 | < th | dose dependent | rect. | 22 | 23 |
| 710 | 131.50 | wind | 1 | 43200 | < th | dose dependent | rect. | 19 | 23 |
| 712 | 131.51 | wind | 1 | 43200 | > th | dose independent | rect. | 24 | 3 |
| 737 | 131.59 | wind | 3 | 43200 | < th | dose dependent | rect. | 17 | 21 |
| 739 | 131.60 | wind | 1 | 43200 | < th | dose dependent | no | NA | NA |
| 752 | 131.63 | wind | 7 | 4320 | < th | dose independent | rect. | 21 | 7 |
| 755 | 131.63 | wind | 3 | 43200 | < th | dose dependent | rect. | 7 | 23 |
| 770 | 131.68 | wind | 1 | 43200 | < th | dose dependent | rect. | 4 | 14 |
| 812 | 131.75 | wind | 1 | 43200 | < th | dose dependent | rect. | 22 | 20 |
| 838 | 131.82 | wind | 5 | 4320 | > th | dose dependent | rect. | 21 | 8 |
| 874 | 131.91 | wind | 5 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 908 | 131.98 | wind | 1 | 43200 | > th | dose independent | rect. | 2 | 16 |
| 953 | 132.10 | wind | 7 | 4320 | > th | dose independent | rect. | 21 | 7 |
| 981 | 132.19 | wind | 1 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 987 | 132.21 | wind | 1 | 43200 | > th | dose independent | rect. | 2 | 14 |