Os01g0828100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : NAD-dependent epimerase/dehydratase family protein.
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Os01g0828100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : NAD-dependent epimerase/dehydratase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 49.32 | 0.33 | 12.7 | -0.741 | 1.7 | -0.705 | 1.38 | -0.00761 | -0.184 | 7.5 | 1010 | 8915 | -- | -- |
| 49.32 | 0.327 | 12.7 | -0.743 | 1.7 | -0.705 | 1.38 | -- | -0.185 | 7.5 | 1010 | 8914 | -- | -- |
| 54.55 | 0.344 | 12.7 | -0.702 | 1.7 | -0.7 | -- | -0.055 | -0.187 | 7.47 | 1010 | 8914 | -- | -- |
| 54.56 | 0.344 | 12.7 | -0.71 | 1.71 | -0.702 | -- | -- | -0.186 | 7.47 | 1010 | 8914 | -- | -- |
| 207.91 | 0.672 | 12.8 | -0.728 | -- | -0.738 | -- | 0.127 | -0.185 | -- | 1010 | 9771 | -- | -- |
| 67.01 | 0.384 | 12.7 | -0.471 | 1.71 | -- | 1.36 | -- | 0.00834 | 7.45 | -- | -- | -- | -- |
| 72.1 | 0.398 | 12.7 | -0.44 | 1.72 | -- | -- | -- | 0.00575 | 7.42 | -- | -- | -- | -- |
| 207.75 | 0.671 | 12.8 | -0.685 | -- | -0.741 | -- | -- | -0.185 | -- | 1010 | 9801 | -- | -- |
| 65.81 | 0.378 | 12.7 | -- | 1.7 | -0.507 | -- | -- | -0.0799 | 7.49 | 1011 | 9877 | -- | -- |
| 228.97 | 0.707 | 12.7 | -0.412 | -- | -- | -- | -- | 0.0334 | -- | -- | -- | -- | -- |
| 77.2 | 0.411 | 12.7 | -- | 1.71 | -- | -- | -- | 0.0547 | 7.44 | -- | -- | -- | -- |
| 219.06 | 0.689 | 12.7 | -- | -- | -0.577 | -- | -- | -0.0578 | -- | 1010 | 9821 | -- | -- |
| 233.45 | 0.713 | 12.7 | -- | -- | -- | -- | -- | 0.0792 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 42.72 | temperature | 10 | 270 | > th | dose dependent | rect. | 9 | 20 |
| 11 | 44.55 | temperature | 15 | 10 | > th | dose dependent | rect. | 11 | 19 |
| 27 | 45.78 | temperature | 15 | 270 | > th | dose independent | rect. | 9 | 20 |
| 73 | 47.98 | wind | 7 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 84 | 48.40 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 13 |
| 95 | 48.78 | radiation | 20 | 14400 | < th | dose independent | rect. | 3 | 3 |
| 97 | 48.80 | temperature | 10 | 270 | > th | dose dependent | rect. | 18 | 22 |
| 100 | 48.91 | humidity | 60 | 43200 | < th | dose independent | rect. | 13 | 18 |
| 108 | 48.97 | humidity | 60 | 43200 | < th | dose independent | rect. | 10 | 21 |
| 114 | 48.98 | humidity | 70 | 43200 | < th | dose dependent | rect. | 17 | 2 |
| 118 | 49.00 | humidity | 60 | 43200 | < th | dose independent | rect. | 13 | 14 |
| 120 | 49.00 | humidity | 60 | 43200 | > th | dose independent | rect. | 13 | 18 |
| 122 | 49.01 | humidity | 60 | 43200 | < th | dose independent | sin | 17 | NA |
| 125 | 49.01 | humidity | 60 | 43200 | > th | dose independent | rect. | 9 | 22 |
| 126 | 49.01 | humidity | 60 | 43200 | > th | dose independent | rect. | 12 | 23 |
| 132 | 49.03 | humidity | 60 | 43200 | > th | dose independent | rect. | 3 | 17 |
| 135 | 49.03 | humidity | 60 | 43200 | > th | dose independent | rect. | 1 | 18 |
| 139 | 49.03 | humidity | 60 | 43200 | > th | dose independent | rect. | 4 | 20 |
| 141 | 49.03 | humidity | 70 | 43200 | < th | dose dependent | rect. | 15 | 5 |
| 142 | 49.04 | humidity | 60 | 43200 | < th | dose independent | rect. | 14 | 10 |
| 150 | 49.04 | humidity | 60 | 43200 | > th | dose independent | rect. | 23 | 19 |
| 191 | 49.07 | humidity | 60 | 43200 | > th | dose independent | rect. | 3 | 13 |
| 202 | 49.07 | humidity | 60 | 43200 | < th | dose independent | rect. | 22 | 20 |
| 210 | 49.08 | humidity | 60 | 43200 | < th | dose independent | rect. | 4 | 15 |
| 228 | 49.08 | humidity | 60 | 43200 | < th | dose independent | rect. | 12 | 23 |
| 231 | 49.09 | humidity | 60 | 43200 | > th | dose independent | sin | 16 | NA |
| 241 | 49.09 | humidity | 60 | 43200 | < th | dose independent | rect. | 10 | 16 |
| 272 | 49.10 | humidity | 60 | 43200 | < th | dose independent | rect. | 4 | 20 |
| 277 | 49.11 | humidity | 60 | 43200 | > th | dose independent | no | NA | NA |
| 322 | 49.13 | radiation | 1 | 4320 | > th | dose independent | rect. | 15 | 3 |
| 324 | 49.13 | humidity | 60 | 43200 | > th | dose independent | rect. | 14 | 10 |
| 357 | 49.14 | humidity | 60 | 43200 | > th | dose independent | sin | 2 | NA |
| 393 | 49.15 | humidity | 60 | 43200 | > th | dose independent | rect. | 17 | 23 |
| 420 | 49.17 | humidity | 60 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 502 | 49.20 | wind | 7 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 517 | 49.21 | humidity | 60 | 43200 | < th | dose independent | no | NA | NA |
| 566 | 49.25 | wind | 7 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 596 | 49.27 | humidity | 60 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 598 | 49.27 | humidity | 60 | 43200 | < th | dose independent | rect. | 16 | 3 |
| 600 | 49.27 | radiation | 20 | 14400 | < th | dose independent | rect. | 21 | 9 |
| 605 | 49.27 | wind | 7 | 43200 | > th | dose dependent | rect. | 16 | 3 |
| 608 | 49.28 | atmosphere | 1010 | 4320 | > th | dose independent | rect. | 13 | 1 |
| 629 | 49.31 | atmosphere | 1010 | 4320 | < th | dose independent | rect. | 13 | 1 |
| 635 | 49.31 | humidity | 60 | 43200 | < th | dose independent | rect. | 17 | 23 |
| 675 | 49.36 | radiation | 10 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 682 | 49.37 | radiation | 1 | 4320 | < th | dose independent | rect. | 15 | 3 |
| 706 | 49.38 | radiation | 1 | 4320 | < th | dose dependent | rect. | 15 | 3 |
| 723 | 49.39 | radiation | 1 | 720 | > th | dose independent | rect. | 10 | 20 |
| 724 | 49.39 | humidity | 70 | 43200 | < th | dose dependent | sin | 19 | NA |
| 738 | 49.41 | wind | 7 | 14400 | < th | dose independent | rect. | 14 | 4 |
| 743 | 49.41 | atmosphere | 1010 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 748 | 49.43 | humidity | 80 | 720 | < th | dose independent | rect. | 10 | 4 |
| 792 | 49.48 | radiation | 1 | 720 | < th | dose dependent | rect. | 22 | 20 |
| 813 | 49.50 | wind | 7 | 14400 | > th | dose independent | rect. | 14 | 3 |
| 814 | 49.50 | wind | 7 | 14400 | > th | dose independent | rect. | 14 | 5 |
| 839 | 49.52 | radiation | 1 | 720 | > th | dose independent | rect. | 10 | 9 |
| 892 | 49.58 | atmosphere | 1010 | 4320 | > th | dose dependent | rect. | 19 | 4 |
| 909 | 49.60 | radiation | 1 | 4320 | < th | dose independent | rect. | 15 | 6 |
| 923 | 49.60 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 21 |
| 924 | 49.61 | radiation | 1 | 4320 | > th | dose independent | sin | 17 | NA |
| 973 | 49.66 | atmosphere | 1010 | 4320 | < th | dose independent | rect. | 10 | 5 |